BAC Information

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BAC

Clone NameMSMg01-513M07
Chromosome5 (Build37)
Map Location 50,849,666 - 51,003,242
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513M07.T7 (MSMg01no513_m07.b1)MSMg01-513M07.TJ (MSMg01no513_m07.g1)
ACCAG586411AG586412
length728741
length of high quality
(start - end)		688 (41 - 728)655 (72 - 726)
definitionCHROMAT_FILE: MSMg01no513_m07.b1 PHD_FILE: MSMg01no513_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:23 2005CHROMAT_FILE: MSMg01no513_m07.g1 PHD_FILE: MSMg01no513_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,002,888 - 51,003,242)(50,849,666 - 50,850,320)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTTTACGTCAAGGGAATCTCTCCAGGCTGGTGGCCACTCAGATTACATT
ACTATATTTATGAGAAGAACTTCATTCTTATTGTTTGTCATATTTCCTTC
ATTACCTGCAAGATTTGTTAAAGTGCCCCTTTGTCTTATGTTGAGAATTT
TTTATATTATTATTATACTTTGTGTCTCCCAATGCTGTAACCTCTTATTT
TATTTTAATTAGCTATTTTCTTTATTTATATTTCAAATGTTATCCCCTTT
CTTAGTTTCCACTCTGAAAAGCCCCTGTCCCCTTCCCCTTCCTCCTGCTC
CACAACCCACACACTCCTGCTTCCTGGCCCTGGCATTCCCCTATATTGGG
GCATAGAACCTTCATAAAACCAAGGGCCCCTACTCCCATTGATGACCAAC
TAGTTTATCCTCTGCTACATATGCAGCTAGAGCCATAAGTCCCATCATGT
GATTTCTTTGATTGATGGTTTCATCCCAGGGAGCTCTGGGGGTACTGGCT
AGTTCATATTGTTGTTCCTCCTATGGGGCTGCAAACCCCTTCAGCTCCTT
GGGTACTTTCTCTAGCTTCTTCATTGGGGACCCTGTGATCTGTCCAATGG
ATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCAGAACCTCT
CANGAGACAGCTATATCAGGCTCCTGGT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGTCCAGCATGTGCTTGTCTAATGGTTG
GGGATATATTACATTGATGAAGTGCTTGCCTAGCTAATACAGATCCTTTA
CCTGCATTCTAAGAATATCAGTCTTTAGAAGGGACTTCTTTGCAACATTA
TGGGACTCAAAAAAATCCAAAGCACAGAAGAGTTGGGAAGATACTTACTT
TTACTTAGTAAATTGTTGGGAAAGGTATAATTAAGTGAGGGAATTTTCTA
TGCAAAAAAAAATCAGCCTATCATAGGTAGTGATTTGTCAGTATCATTCA
TGAAAGTTAACCATTTCTATTAGAAAAAATAGGTTAACATAGTTATATAA
GTTCAAAGTCAATCCCCATCTGTTTATATATATAGGCACATAATGTCAGC
GGGATTCTATCAGATTTCTGAGATTTTAGTTCATTTCTCCTGATTCAGGC
AATACTCTCAGATTTTTTCAATGAAATTTACTTGTAGATCTTGACGCATA
TTTTTGTGGTTAGAGGAGGAAATGTCCAGATAGACTGTAAGCTTCTCAAG
AAGCTGATTGGCTCTATGTTCACCAACACAAGATTTTTCAGAGCATAGCT
GCTGATGCGTATTTGGTCACAATGCTGTGTTTCTTACAATACAGACATGC
CAGGCTACACAAACCAAATCTGGCCATACAACAAGATGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_m07.b1 MSMg01no513_m07.b1 CHROMAT_FILE:
MSMg01no513_m07.b1 PHD_FILE: MSMg01no513_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:23 2005
         (688 letters)



>mm_chr5_51002888_51003975
          Length = 1088

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttacgtcaagggaatctctccaggctggtggccactcagattacattacta 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaattcactttaggtcaagggaatctctccaggctggtggccactcagattacattacta 296

                                                                       
Query: 65  tatttatgagaagaacttcattcttattgtttgtcatatttccttcattacctgcaagat 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 295 tatttatgagaagaacttcattcttattgtttgtcatatttccttcattaactgcaagat 236

                                                                       
Query: 125 ttgttaaagtgcccctttgtcttatgttgagaattttttatattattattatactttgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ttgttaaagtgcccctttgtcttatgttgagaattttttatattattattatactttgtg 176

                                                                       
Query: 185 tctcccaatgctgtaacctcttattttattttaattagctattttctttatttatatttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tctcccaatgctgtaacctcttattttattttaattagctattttctttatttatatttc 116

                                                                       
Query: 245 aaatgttatcccctttcttagtttccactctgaaaagcccctgtccccttccccttcctc 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 115 aaatgttatcccctttcttagtttccactctgaaaagctcctgtccccttccccttcctc 56

                                                                  
Query: 305 ctgctccacaacccacacactcctgcttcctggccctggcattcccctatattgg 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  ctgctccacaacccacacactcctgcttcctggccctggcattcccctatattgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_m07.g1 MSMg01no513_m07.g1 CHROMAT_FILE:
MSMg01no513_m07.g1 PHD_FILE: MSMg01no513_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:23 2005
         (655 letters)



>mm_chr5_50849466_50850520
          Length = 1055

 Score = 1251 bits (647), Expect = 0.0
 Identities = 653/655 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtccagcatgtgcttgtctaatggttggggatatattacattgatgaagtgcttgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aagtccagcatgtgcttgtctaatggttggggatatattacattgatgaagtgctcgcct 260

                                                                       
Query: 61  agctaatacagatcctttacctgcattctaagaatatcagtctttagaagggacttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctaatacagatcctttacctgcattctaagaatatcagtctttagaagggacttcttt 320

                                                                       
Query: 121 gcaacattatgggactcaaaaaaatccaaagcacagaagagttgggaagatacttacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaacattatgggactcaaaaaaatccaaagcacagaagagttgggaagatacttacttt 380

                                                                       
Query: 181 tacttagtaaattgttgggaaaggtataattaagtgagggaattttctatgcaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttagtaaattgttgggaaaggtataattaagtgagggaattttctatgcaaaaaaaa 440

                                                                       
Query: 241 atcagcctatcataggtagtgatttgtcagtatcattcatgaaagttaaccatttctatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagcctatcataggtagtgatttgtcagtatcattcatgaaagttaaccatttctatt 500

                                                                       
Query: 301 agaaaaaataggttaacatagttatataagttcaaagtcaatccccatctgtttatatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaaaataggttaacatagttatataagttcaaagtcaatccccatctgtttatatat 560

                                                                       
Query: 361 ataggcacataatgtcagcgggattctatcagatttctgagattttagttcatttctcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataggcacataatgtcagcgggattctatcagatttctgagattttagttcatttctcct 620

                                                                       
Query: 421 gattcaggcaatactctcagattttttcaatgaaatttacttgtagatcttgacgcatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gattcaggcaatactctcagattttttcaatgaaatttacttgtagatcttgaagcatat 680

                                                                       
Query: 481 ttttgtggttagaggaggaaatgtccagatagactgtaagcttctcaagaagctgattgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgtggttagaggaggaaatgtccagatagactgtaagcttctcaagaagctgattgg 740

                                                                       
Query: 541 ctctatgttcaccaacacaagatttttcagagcatagctgctgatgcgtatttggtcaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctatgttcaccaacacaagatttttcagagcatagctgctgatgcgtatttggtcaca 800

                                                                  
Query: 601 atgctgtgtttcttacaatacagacatgccaggctacacaaaccaaatctggcca 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgctgtgtttcttacaatacagacatgccaggctacacaaaccaaatctggcca 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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