Query= MSMg01no513_m08.b1 MSMg01no513_m08.b1 CHROMAT_FILE:
MSMg01no513_m08.b1 PHD_FILE: MSMg01no513_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:23 2005
(599 letters)
>mm_chr5_34400277_34401276
Length = 1000
Score = 1100 bits (569), Expect = 0.0
Identities = 590/597 (98%), Gaps = 1/597 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttgttccactaaagtcttaaagtatgtgtgagaaatagagacaagggtaggcc 63
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgttctactaaggtcttaaagtatgtgtgagaaatagagacaagggtaggcc 263
Query: 64 aagaaaaggaagaaaagcatcaatcagtccatgagcagagcaacactctagttctgttgg 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagcaaaggaagaaaagcatcaatcagtccatgagcagagcaacactctagttctgttgg 323
Query: 124 gaatggacactgacagaatgactcctcagacctggctggcatggtaagtggggcaatg-c 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 gaatggacactgacagaatgactcctcagacctggctggcatggtaagtggggcaatggc 383
Query: 183 aaaccccacaacatcagctgtcactcccctgacagtttcctggaaagcagggagaagtgc 242
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 aaaccccacaacatcagctgtcactcccctgacagcttcctggaaagcagggagaagtgc 443
Query: 243 acagtctatctggggtctgagtgcctctgtccagtagaaaagcgacactgggccaataat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagtctatctggggtctgagtgcctctgtccagtagaaaagcgacactgggccaataat 503
Query: 303 acagtaatcacaaggtattaggggaaggtttctttaaaaagagagagaaatgcgttttca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagtaatcacaaggtattaggggaaggtttctttaaaaagagagagaaatgcgttttca 563
Query: 363 tttgctagcgattttgaatgcccctccatccctacttttgggcagtgagaagcataataa 422
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgctagtgattttgaatgcccctccatccctacttttgggcagtgagaagcataataa 623
Query: 423 tatatttatgattacatgatacatatttatttgtgccttttaactggagtttttcatctt 482
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 tatatttatgattacatgatacatatttatttgtgccttttaactggagcttttcatctt 683
Query: 483 atttatatttaatgtttattgataactattaagtttaatatttccatcttgatatttgtt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atttatatttaatgtttattgataactattaagtttaatatttccatcttgatatttgtt 743
Query: 543 tttatttaccctatctgcattttgttttctgttcctccttccttgaactattttagg 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttatttaccctatctgcattttgttttctgttcctccttccttgaactattttagg 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space: 583110
Effective search space used: 583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_m08.g1 MSMg01no513_m08.g1 CHROMAT_FILE:
MSMg01no513_m08.g1 PHD_FILE: MSMg01no513_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:24 2005
(601 letters)
>mm_chr5_34593087_34594087
Length = 1001
Score = 1123 bits (581), Expect = 0.0
Identities = 596/601 (99%)
Strand = Plus / Minus
Query: 1 agccaacaatggggtctatttgtgttgactagctcagtaacccagagtccagccaagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agccaacaatggggtctatttgtgttgactagctcagtaacccagagtccagccaagact 742
Query: 61 aaagctggagggccccactgggcatattggaaccaaagcctagctagccagtactggcca 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 aaagctggagggccccactgggcatattggaaccaatgcctagctagccagtactggcca 682
Query: 121 tccatgagcctgagaaagaaaagctttgtgacagcacctggggtcacttgtccccagatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccatgagcctgagaaagaaaagctttgtgacagcacctggggtcacttgtccccagatc 622
Query: 181 agtttcaaagctctgaaaggtaatagatcgaagatgctgagtggaccagaagcagagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttcaaagctctgaaaggtaatagatcgaagatgctgagtggaccagaagcagagaca 562
Query: 241 gggtttctgtgggacagggctgacctgggagccaccaggtagcattgggaagtctgtgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtttctgtgggacagggctgacctgggagccaccaggtagcattgggaagtctgtgag 502
Query: 301 atgacagcctaggttgctggagaggaaagcctcacatgcctgcctgcacctgaggccttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 atgacagcctaggttgctggagaggaaagcctcacatgcctgcctgcacctgaggccctg 442
Query: 361 tggcaggcagcacacgtgggaggtatggggtatcatggcctgtgtcgcctgtgggcatgg 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcaggcagcacacgtgggaggtgtggggtatcatggcctgtgtcgcctgtgggcatgg 382
Query: 421 ggcagacccacctggctactttcctgctcgtccttcaggaatgtctgtcatgttcctttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcagacccacctggctactttcctgctcgtccttcaggaatgtctgtcatgttcctttc 322
Query: 481 ctatatgactccatgagaaggaaatagcaccaacccctcactaacttcatgtcatggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ctatatgactccatgagaaggaaatagcaccaacccctcactaactttatgtcatggaaa 262
Query: 541 tgtagctgccctccagtctctgcccacttctgctcagggctaccccagcctcttcctcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgtagctgccctccagtctctgcccacttctgctcagggctaccccagcctctccctcct 202
Query: 601 t 601
|
Sbjct: 201 t 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
