BAC Information

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BAC

Clone NameMSMg01-513P04
Chromosome5 (Build37)
Map Location 90,021,274 - 90,021,867
singlet/doubletsinglet
Overlap genenone
Upstream geneRufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2
Downstream geneLOC631105, Adamts3, EG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513P04.T7 (MSMg01no513_p04.b1)MSMg01-513P04.TJ (MSMg01no513_p04.g1)
ACCAG586548AG586549
length755754
length of high quality
(start - end)
719 (35 - 753)637 (66 - 702)
definitionCHROMAT_FILE: MSMg01no513_p04.b1 PHD_FILE: MSMg01no513_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:39 2005CHROMAT_FILE: MSMg01no513_p04.g1 PHD_FILE: MSMg01no513_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTA
TATTTTGGATATTATCCGTCTATAGGATGTAGGGCTAGTAAAGATCTTTC
CCCAATCTATAGGTTGCTGTTTGGTCCTATTGACAGTGTCCTTTGCCTTA
TAGAAGGTTTCAGTTTCATGAGGTGTCATTTGTCAATTGTTGATCTTACA
GCCTGAACCATTGATGTTCTATTAAGGAAATCCTTCCTGTGCCAATGTGT
TCCAGACTATTTCCCACTTTCTCTTCTATTAGATCTAGTGTATCTGGTTT
TATGTTGAGGTCCTTGATCCACTTGGACTTGAGCTTTGGACAAAAAGATA
AAAATGGGTCAATTTGCATTCTTCTACAGGCAGACTGCCAGTTAGACCAG
CTGACACCAAGATGTGCTTATAGACAGGAGCCTGGTATGGCTGTCCTCTG
AGAATCTTTGCCAGCACCTGACTAAGACAGATGCAGATACTTACAGCCAA
CGATTGGATTGAGCCTGGGGACCCCTATGGTAGAGATAGGGGGAGGACTG
AAGGAGCTGAAGGGGATTGCAACCCCATAGGATAAACAATAGTATCAACT
AACCAGACCCCTCAAAACTATGGAATAAACCACCAACCAAAGAGTACACA
TGGGGCTGGTCCATGGCTCCCACAACATATGTAGCAGAGAACTGCCTCAT
CTGGCATCCATGGGAGGGTATGCACTTGGTCCTGTGGAGGCTTGATGCTC
CAGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTCTTGCTAATGAGACCTGATAGGACAAAAAAGT
GTCTCTGTGGTAATTACATGTAATACTGAAGTCTAAAAGCACAGAGAAGG
CCATAGTAGGTGAATACACTCAAGGAATGCTGTATAACATAGTACTTATA
ATTAACAATATGCTATTGTGTACTGAATACAAAAGGGGAGAGCTCTTGTG
TTGCATTTTCCTACAAGTGAAGGACACATAAAAAGGAACACAAGGAAACG
TCAGAAGGCCTTAGATGACACTCGATACAGACTTCCTATTAAAACTTCAG
CTGCGATGAGACTAATGGCAGACAAAGTGATACTACTGTCCTCTGTTGAA
TGTCTTGGACACATTTAAAATCTAAACTAAATTACTTATGAATGTCAGTG
TACCAAGGCACTAATGAGGATTAACAAAGAGCTCAGAAGAAATTGAACAA
ACGAACTGGAAACAGAGTGATTGATGCTGTGATGGTACTAAAAAGCCTAT
TGAGAAAACTCATCTTTCAACACTCTTCAATAGGTACAGAAAGCTGAAAT
GAATGCAGAACACTAGATCTTCCACTTGACTTAAGAGAAGATTGAACGTG
GTTTTCAATAGAAGTAGAAAATATATTACTCAAGGATATTATCAAAAAAG
AAAAAAAGAAGGCCTTAGATGGAGGTGAGAGATCCACAGATCACTTGTGT
TCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_p04.g1 MSMg01no513_p04.g1 CHROMAT_FILE:
MSMg01no513_p04.g1 PHD_FILE: MSMg01no513_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:39 2005
         (637 letters)



>mm_chr5_90020831_90021867
          Length = 1037

 Score = 1056 bits (546), Expect = 0.0
 Identities = 582/594 (97%)
 Strand = Plus / Minus

                                                                        
Query: 44   ggtaattacatgtaatactgaagtctaaaagcacagagaaggccatagtaggtgaataca 103
            |||||||||||  |||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 1037 ggtaattacatacaatactgaagtctaaaagaacagagaaggccatagtacgtgaataca 978

                                                                        
Query: 104  ctcaaggaatgctgtataacatagtacttataattaacaatatgctattgtgtactgaat 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  ctcaaggaatgctgtataacatagtacttataattaacaatatgctattgtgtactgaat 918

                                                                        
Query: 164  acaaaaggggagagctcttgtgttgcattttcctacaagtgaaggacacataaaaaggaa 223
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 917  acaaaaggggagagctcttgtgttgcattttcctacaagtgaaggacacataaaaaagaa 858

                                                                        
Query: 224  cacaaggaaacgtcagaaggccttagatgacactcgatacagacttcctattaaaacttc 283
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  cacaaggaaatatcagaaggccttagatgacactcgatacagacttcctattaaaacttc 798

                                                                        
Query: 284  agctgcgatgagactaatggcagacaaagtgatactactgtcctctgttgaatgtcttgg 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  agctgcgatgagactaatggcagacaaagtgatactactgtcctctgttgaatgtcttgg 738

                                                                        
Query: 344  acacatttaaaatctaaactaaattacttatgaatgtcagtgtaccaaggcactaatgag 403
            ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||
Sbjct: 737  acacatttaaaatctaaactaaattacttatgaatgttagcataccaaggcactaatgag 678

                                                                        
Query: 404  gattaacaaagagctcagaagaaattgaacaaacgaactggaaacagagtgattgatgct 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  gattaacaaagagctcagaagaaattgaacaaacgaactggaaacagagtgattgatgct 618

                                                                        
Query: 464  gtgatggtactaaaaagcctattgagaaaactcatctttcaacactcttcaataggtaca 523
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617  gtgatggtactaaagagcctattgagaaaactcatctttcaacactcttcaataggtaca 558

                                                                        
Query: 524  gaaagctgaaatgaatgcagaacactagatcttccacttgacttaagagaagattgaacg 583
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 557  gaaagctgaaatgaatgcagaacactagatcttccacttgacttaacagaagattgaacg 498

                                                                  
Query: 584  tggttttcaatagaagtagaaaatatattactcaaggatattatcaaaaaagaa 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497  tggttttcaatagaagtagaaaatatattactcaaggatattatcaaaaaagaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)