BAC Information

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BAC

Clone NameMSMg01-513P23
Chromosome5 (Build37)
Map Location 12,010,132 - 12,178,843
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513P23.T7 (MSMg01no513_p23.b1)MSMg01-513P23.TJ (MSMg01no513_p23.g1)
ACCAG586586AG586587
length782766
length of high quality
(start - end)		370 (37 - 406)628 (67 - 694)
definitionCHROMAT_FILE: MSMg01no513_p23.b1 PHD_FILE: MSMg01no513_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:43 2005CHROMAT_FILE: MSMg01no513_p23.g1 PHD_FILE: MSMg01no513_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,178,479 - 12,178,843)(12,010,132 - 12,010,759)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAA
ATTTCCAGTAAAAATATAAATAGCATATTGGCCTGGAACATTAATACACA
TAGTAATAAAATTTAAAACTCCACACTTTTAGCTTCAGGATACATCTAAA
ACAATGACTAATCTAAGAGATGAGATTATAAATCTTAGAATCACATTCCA
GGAATTTTCCTGTCCCAACAAGACACCATCAATCTACATTAAAACAATAA
ATTTCAAAATTGGCAAGTAATAATGCTGTAACCATAGTGTTTTGAAAACT
GGTCATGATATCCCTTTAATTATATCACAGACAAATTTACCAATTCTGAA
TTGGTGTATCTGAGTATTTTCCTTACTGTCTGTATGGTGGAAGAAGTCAG
TTTCACACCACAATCCCATCAGTGTATTCAAAGATTAAAATAGAAAAAAG
AAAAGAAAAGAAAGGATTCTAAAATAAGCACTTTTGTCCAATAACTTGAG
TAGAAGGGTCACATACAATTTCTTTGATAAAAATCCATTAACTCAAATTT
CCCCTTCTTGGCTTCATACTGACATTTGCTTGTATTTGTCATTTGACAAT
CTATTCAGTACACAGATGCTCTAAACCTATTTCTCACCCTGCTTCTTTTT
TCCATTTTTTGTTTGTTTATTTCATTGTTTGGGTGGTTTTGGTGTTGTTT
TGAGACAGGGTTTTACTATGTAGCTCTGGCTGTTATGGGACTCACTGCAT
AGATCAAGATGACCCTCACCTGCCTCTGCCTA

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAGGTAGGGCAGTCTTTGATGGCCTTTCCTTCA
GTCTTTGCTCCTCTCTTTGTCCCTGCATTTCCTTTAGACAGGAGTAATTC
TGGATTAGACATTTCTCAACCAATAATCTCCTTTTAATACATAGCTTTCA
GCGATCCGACTATAGTTTTTCATTACAGAGTAAGTCAATAAGGACAGAAA
TACTCAAGCCTTTACTCAAAGTAAGAGACATATCAGGTGTGAATAACTAT
CAAATGCCTTGAGGATGCAAGGAAAGAGGTGGCAATGGAAATGCATATTG
ATAACACACAGAGGAAACAAAGGTTCCAGTCTCTTTTATCTTCCTGAAAC
GTTGTTTATTATCTGTGTGATTAACTTTTAAGTTTGAAGTGAGCCTCTCA
TACAGATGAGAACATGCTCAAGATTATTTAAGACTTGTAATGCAATGCTT
GCCAATAGCTATTATGAAGCTAAAATATCTCAAGACCCAGTGGAGCAAAA
TGATGCACATGAGCAAGCATGACTTTTGTGGTTTGGCATTCATTATTTAA
TGTATACAAACATAAATTGAATAACTCCTTGAATGAAAATTAATCTAAGC
ACCATCTTTTATATGTAACATATTATTTCTTTAGCTTTAGTTTATTCTTA
ATTATGGGATTGTTAGGGTGTCTACATATGGATATGTTCACATGAGTGCA
GATACCTGCAGAAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_p23.b1 MSMg01no513_p23.b1 CHROMAT_FILE:
MSMg01no513_p23.b1 PHD_FILE: MSMg01no513_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:43 2005
         (370 letters)



>mm_chr5_12178275_12179044
          Length = 770

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaaatttccagtaaaaatataaatagcatattggcctggaacattaatacaca 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattcaaaaattaaaagtaaaaatataaatagcatattggcctggaacattaatacaca 510

                                                                       
Query: 65  tagtaataaaatttaaaactccacacttttagcttcaggatacatctaaaacaatgacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tagtaataaaatttaaaactccacacttttagcttcaggatacatctaaaacaatgacta 450

                                                                       
Query: 125 atctaagagatgagattataaatcttagaatcacattccaggaattttcctgtcccaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atctaagagatgagattataaatcttagaatcacattccaggaattttcctgtcccaaca 390

                                                                       
Query: 185 agacaccatcaatctacattaaaacaataaatttcaaaattggcaagtaataatgctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agacaccatcaatctacattaaaacaataaatttcaaaattggcaagtaataatgctgta 330

                                                                       
Query: 245 accatagtgttttgaaaactggtcatgatatccctttaattatatcacagacaaatttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 accatagtgttttgaaaactggtcatgatatccctttaattatatcacagacaaatttac 270

                                                                       
Query: 305 caattctgaattggtgtatctgagtattttccttactgtctgtatggtggaagaagtcag 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caattttgaattggtgtatctgagtattttccttactgtctgtatggtggaagaagtcag 210

                
Query: 365 tttca 369
           |||||
Sbjct: 209 tttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_p23.g1 MSMg01no513_p23.g1 CHROMAT_FILE:
MSMg01no513_p23.g1 PHD_FILE: MSMg01no513_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:43 2005
         (628 letters)



>mm_chr5_12009932_12010959
          Length = 1028

 Score = 1183 bits (612), Expect = 0.0
 Identities = 624/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggtagggcagtctttgatggcctttccttcagtctttgctcctctctttgtccctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggtagggcagtctttgatggcctttccttcagtctttgctcctctctttgtccctgc 260

                                                                       
Query: 61  atttcctttagacaggagtaattctggattagacatttctcaaccaataatctcctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcctttagacaggagtaattctggattagacatttctcaaccaataatctcctttta 320

                                                                       
Query: 121 atacatagctttcagcgatccgactatagtttttcattacagagtaagtcaataaggaca 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacgtagctttcagcgatccgactatagtttttcattacagagtaagtcaataaggaca 380

                                                                       
Query: 181 gaaatactcaagcctttactcaaagtaagagacatatcaggtgtgaataactatcaaatg 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatactcaatcctttactcaaagtaagagacatatcaggtgtgaataactatcaaatg 440

                                                                       
Query: 241 ccttgaggatgcaaggaaagaggtggcaatggaaatgcatattgataacacacagaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgaggatgcaaggaaagaggtggcaatggaaatgcatattgataacacacagaggaa 500

                                                                       
Query: 301 acaaaggttccagtctcttttatcttcctgaaacgttgtttattatctgtgtgattaact 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 acaaaggttccagtctcttttatcttcctgaaacgttgcttattatctgtgtgattaact 560

                                                                       
Query: 361 tttaagtttgaagtgagcctctcatacagatgagaacatgctcaagattatttaagactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaagtttgaagtgagcctctcatacagatgagaacatgctcaagattatttaagactt 620

                                                                       
Query: 421 gtaatgcaatgcttgccaatagctattatgaagctaaaatatctcaagacccagtggagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaatgcaatgcttgccaatagctattatgaagctaaaatatctcaagacccagtggagc 680

                                                                       
Query: 481 aaaatgatgcacatgagcaagcatgacttttgtggtttggcattcattatttaatgtata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatgatgcacatgagcaagcatgacttttgtggtttggcattcattatttaatgtata 740

                                                                       
Query: 541 caaacataaattgaataactccttgaatgaaaattaatctaagcaccatcttttatatgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaacataaattgaataactccttgaatgaaaattaatctaagcaccatcttttatatgt 800

                                       
Query: 601 aacatattatttctttagctttagttta 628
           ||||||||||||||||| ||||||||||
Sbjct: 801 aacatattatttctttaactttagttta 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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