Query= MSMg01no514_d14.b1 MSMg01no514_d14.b1 CHROMAT_FILE:
MSMg01no514_d14.b1 PHD_FILE: MSMg01no514_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:02 2005
(610 letters)
>mm_chr5_145609599_145610604
Length = 1006
Score = 1114 bits (576), Expect = 0.0
Identities = 600/610 (98%), Gaps = 4/610 (0%)
Strand = Plus / Minus
Query: 1 tagctcagtggtagagtgtctgcctagctcacacaagtcctggggccattccacagcacc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tagctcagtggtcgagtgtctgcctagctcacacaagtcctggggccattccacagcacc 703
Query: 61 acagcatgtgctctctgaggctcatcccagatgaagtgtgtgtgcaccaggaactccctt 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 702 acagcatgtgctctctgaggctcatcccagatgaa----gtgtgcaccaggaactccctt 647
Query: 121 aaggtgttcaatcgggacgaatgacgctctactctgccatgctgtgcctcctgagagaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aaggtgttcaatcgggacgaatgacgctctactctgccatgctgtgcctcctgagagaac 587
Query: 181 ccgtttgctgtgtggtttgtggattagcaatgagtgttcatgcacaccttgctgcatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ccgtttgctgtgtggtttgtggattagcaatgagtgttcatgcacaccttgctgcatgga 527
Query: 241 agccctaagcgctctcccttctccttaggtcggccagtggagataagcgcaccacatatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agccctaagcgctctcccttctccttaggtcggccagtggagataagcgcaccacatatg 467
Query: 301 cgcagggttcccgagaagcagccctgtgggaacagctcacgctacagtcattcaactctg 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cgcagggttccctagaagcagccctgtgggaacagctcacgctacagtcattcaactctg 407
Query: 361 gctgtgagctgaacaaacactgtgattctcacttcttttggggtttgagatctagtgtga 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gctgtcagctgaacaaacactgtgattctcacttcttttggggtttgagatctagtgtga 347
Query: 421 gtcaagtggaaccaggtcaccaaacagaaaactggtaaggtggagcagattgaggaacca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtcaagtggaaccaggtcaccaaacagaaaactggtaaggtggagcagattgaggaacca 287
Query: 481 aggcaaatctcgtaatcgagaatggttcctgtcctggagcaagtgtctcccacgttccac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aggcaaatctcgtaatcgagaatggttcctgtcctggagcaagtgtctcccacgttccac 227
Query: 541 taggaagaccatggcatctggtcacgtggcgtggagcccagagttctccatgctgatgag 600
| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 226 tgggaagaccatggcatctggtcacgtggcatggagcccagagttctccacgctgatgag 167
Query: 601 gtatctagat 610
||||||||||
Sbjct: 166 gtatctagat 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1006
Length adjustment: 10
Effective length of query: 600
Effective length of database: 996
Effective search space: 597600
Effective search space used: 597600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_d14.g1 MSMg01no514_d14.g1 CHROMAT_FILE:
MSMg01no514_d14.g1 PHD_FILE: MSMg01no514_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:02 2005
(669 letters)
>mm_chr5_145449903_145450971
Length = 1069
Score = 1239 bits (641), Expect = 0.0
Identities = 662/669 (98%)
Strand = Plus / Plus
Query: 1 caggtactgccaggcatgaccttataaggggaaaggatgtttaacctggctaccaactat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtactgccaggcatgaccttataaggggaaaggatgtttaacctggctaccaactat 260
Query: 61 gtgacctcctggagggggtggcaaagctgagggcacagggctacatgcaccagaacacac 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gtgacctcctggagggggtggcaaagctgagggcacagggctacatgcgccagaacacac 320
Query: 121 aggtcccagggctgtggggttgggtggggggatcgatcctactccttcggatttcaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtcccagggctgtggggttgggtggggggatcgatcctactccttcggatttcaggtt 380
Query: 181 ttccaggatgtagacatgcctcaaccccattcttactccaggtcacccccatacacacac 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccagggtgtagacatgcctcaaccccattcttactccaggtcacccccatacacacac 440
Query: 241 ccaaccccaacctgaactattaatcctcacgcccccacctcccaaatgctaggttgattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaccccaacctgaactattaatcctcacgcccccacctcccaaatgctaggttgattg 500
Query: 301 tacctcatatctggtttgtgtaatgctgggatcaactccagtgctttgtgtgtgctaggc 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tacctcatatctggtttgtgtaatgctgggatcaaccccagtgctttgtgtgtgctaggc 560
Query: 361 aggcactctcttgagtaagttacattccaacccttcccctctatgccaataccataaccc 420
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 561 aggcactctcttgagtaagttacattccaacccttcccctctctgccgataccataaccc 620
Query: 421 ccctccctgggcttcatgaagggcttcagaggctgcgctaaagaccatagataatgggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctccctgggcttcatgaagggcttcagaggctgcgctaaagaccatagataatgggaa 680
Query: 481 atccacaacgtatggcctcctagtctagagactagaagtctgagaccaaggtgccttgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atccacaacgtatggcctcctagtctagagactagaagtctgagaccaaggtgccttgaa 740
Query: 541 ggtcagtgcctccccacagctgctctccttcaccccttggtgactatcttgtcccccgga 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 ggtcagtgcctccccacagctgctctccttcaccccttggtgactgtcttgtcccccgga 800
Query: 601 gctttgcctgaggacctggttagtttttgccaccttgacacaaactcggatctgggaaga 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctttgcctgatgacctggttagtttttgccaccttgacacaaactcggatctgggaaga 860
Query: 661 gggaacctc 669
|||||||||
Sbjct: 861 gggaacctc 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
