Query= MSMg01no514_l24.b1 MSMg01no514_l24.b1 CHROMAT_FILE:
MSMg01no514_l24.b1 PHD_FILE: MSMg01no514_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:45 2005
(634 letters)
>mm_chr5_107732548_107733581
Length = 1034
Score = 1127 bits (583), Expect = 0.0
Identities = 617/633 (97%), Gaps = 10/633 (1%)
Strand = Plus / Minus
Query: 12 cctgtgactc-ccacgccatgatatgagcagcccccatcaatatagatgatgatgataat 70
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 cctgtgacacaccacgccatgatatgagcagcccccatcaatatagatgatgatgataat 975
Query: 71 gatgatacgacgacgagacgactactaaaactttttaaaaattaaaagcactgaaatact 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gatgatacgacgacgagacgactactaaaactttttaaaaattaaaagcactgaaatact 915
Query: 131 gacaatgtgatcagaaaggatgtaatgcctaagtggatacaaaatcactcaggggcaggt 190
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 914 gacaatgtaatcagaaaggatgtaatgcctaagtggatacaaaaccactcaggggcaggt 855
Query: 191 gagacagaccagacagggctgacacttgctgggacccacgtggtggaaggagagagccga 250
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gagacagaccagacaaggctgacacttgctgggacccacgtggtggaaggagagagccga 795
Query: 251 cttctgcaagctgccctctgacttccatacttgtaatattacaacaactaaataataaaa 310
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 794 cttctgcaagctgccctctgacttccatacttgtaatattacaacaactaaatgataaaa 735
Query: 311 aaataaaagcacccgatagggatgagctttgggcacgtggtcgtcaagtgaactgaactt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aaataaaagcacccgatagggatgagctttgggcacgtggtcgtcaagtgaactgaactt 675
Query: 371 tgagctaagttttaagtgagccggcttctgtggtggatgcaccccaggatccccctgaga 430
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgagctaagttttaagtgagctggcttctgtggtggatgcaccccaggatccccctgaga 615
Query: 431 ggtgaaagcttccgagtggtaagttaccgatagagacctaagtgtgaaagtgacctgagg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggtgaaagcttccgagtggtaagttaccgatagagacctaagtgtgaaagtgacctgagg 555
Query: 491 aaaagcagagtctgtatatgacagggtgcatatgtgcatacgtatatgaacatacttaca 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaagcagagtctgtatatgacagggtgcatatgtgcatacgtatatgaacatacttaca 495
Query: 551 cagatgtatactg---gt------aagctccccagacaccccagagtgcgtattccatac 601
||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 494 cagatgtatactgggagtaccttgaagctccccagacaccccagagtgcgtattccatac 435
Query: 602 ccactgagacatacttattatctcccgacctga 634
|||||||||||||||||||||||||||||||||
Sbjct: 434 ccactgagacatacttattatctcccgacctga 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_l24.g1 MSMg01no514_l24.g1 CHROMAT_FILE:
MSMg01no514_l24.g1 PHD_FILE: MSMg01no514_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:46 2005
(581 letters)
>mm_chr5_107560723_107561703
Length = 981
Score = 1116 bits (577), Expect = 0.0
Identities = 580/581 (99%)
Strand = Plus / Plus
Query: 1 aggtcaatagaaatctatttaacagtagtgatgttcactcctgctttttcttccggtccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcaatagaaatctatttaacagtagtgatgttcactcctgctttttcttccggtccc 260
Query: 61 tgaatgtgaggacgccatacatataaatgctacagcttgattctgtgcttcccagacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatgtgaggacgccatacatataaatgctacagcttgattctgtgcttcccagacatc 320
Query: 121 agcggacccacgatgagaagagaagaagactccagcttagactgtgtataacagctactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcggacccacgatgagaagagaagaagactccagcttagactgtgtataacagctactg 380
Query: 181 aacaaacacactggaggacattatatgtaattatctcaggccacagaaatgaagtgacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaacacactggaggacattatatgtaattatctcaggccacagaaatgaagtgacag 440
Query: 241 caggagaaacctgtcccacacaggcaggcctgacagaacccctgcggtggctccagcgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggagaaacctgtcccacacaggcaggcctgacagaacccctgcggtggctccagcgag 500
Query: 301 gtcaaaggggtctgatttctgttatggcaacagaacatagccgtttaatatgggcaatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaaaggggtctgatttctgttatggcaacagaacatagccgtttaatatgggcaatgg 560
Query: 361 caggaggcacacaagatgaactgataagaaactggcaaaagtaaaatatttactaatttc 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 caggaggcacacaagatgaactgataagaaaccggcaaaagtaaaatatttactaatttc 620
Query: 421 ccctacacgtcctcctgagaggagcaaccccatcactcacacagagaaggtcacaaaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctacacgtcctcctgagaggagcaaccccatcactcacacagagaaggtcacaaaaac 680
Query: 481 aaccgcaatcccggtctccatgggacctggaaaaattaatcctcacactggtcttgtcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaccgcaatcccggtctccatgggacctggaaaaattaatcctcacactggtcttgtcct 740
Query: 541 ttcagttggctgtccttctggcacggcgtgcttatctgacc 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcagttggctgtccttctggcacggcgtgcttatctgacc 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
