Query= MSMg01no514_p04.b1 MSMg01no514_p04.b1 CHROMAT_FILE:
MSMg01no514_p04.b1 PHD_FILE: MSMg01no514_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:02 2005
(584 letters)
>mm_chr5_63733863_63734846
Length = 984
Score = 745 bits (385), Expect = 0.0
Identities = 404/415 (97%), Gaps = 9/415 (2%)
Strand = Plus / Plus
Query: 179 gcctttaatcccagcactcgggaggcagagacaggcagatttctgagttcgaggccagcc 238
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 370 gcctttaatcccagcactcgggaggcagagacaggcggatttctgagttcgaggccagcc 429
Query: 239 tggtctacaaagtgagttccaggacatccagggctacacagagaaaccctgtctcaaaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tggtctacaaagtgagttccaggacatccagggctacacagagaaaccctgtctcaaaaa 489
Query: 299 aaaaa-----tt----taaattaattttaatcatatataatcaccaaaaacttaattgtg 349
||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaaaaaaaaattaaattaaattaattttaatcatatataatcaccaaaaacttaattgtg 549
Query: 350 gaatatgtaaacaagaaaaacaatcatacaaacagacagtttccagatatcaaaaactga 409
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 550 gaatatgtaaacaagaaaaacaatcatataaacagacagtttccagatatcaaaaactga 609
Query: 410 ggttcaatgaattcttgaagagatgctgaaattcatattgatgatgttagttttagggct 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggttcaatgaattcttgaagagatgctgaaattcatattgatgatgttagttttagggct 669
Query: 470 ggggtttttagttcaatggtatagaatgattgcctatgaagctcaagaagaaagaagacc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggggtttttagttcaatggtatagaatgattgcctatgaagctcaagaagaaagaagacc 729
Query: 530 aaagggtagatgcttcagtcctactcagaagggtgaacaaaataattccaggagg 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aaagggtagatgcttcagtcctactcagaagggtgaacaaaataattccaggagg 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_p04.g1 MSMg01no514_p04.g1 CHROMAT_FILE:
MSMg01no514_p04.g1 PHD_FILE: MSMg01no514_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:02 2005
(625 letters)
>mm_chr5_63896171_63897194
Length = 1024
Score = 1075 bits (556), Expect = 0.0
Identities = 574/580 (98%), Gaps = 1/580 (0%)
Strand = Plus / Minus
Query: 1 tgttcacatggtcacacatctgcaatagaagatatgctgagttttcttctgtgatttttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 579 tgttcacatggtcacacatctgcaatagaagatatgctgagttttcttctgtga-ttttt 521
Query: 61 taaacactctccattgtttgacaataatacatattagaaactaaaaaatttctgaagtgt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgaacactctccattgtttgacaataatacatattagaaactaaaaaatttctgaagtgt 461
Query: 121 cttgattaatttcaatcacactttactgaatcccaaaggcagtgtctttcatctgcatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cttgattaatttcaatcacactttactgaatcccaaaggcagtgtctttcatctgcatgt 401
Query: 181 gatgactgggagcactcacactgacatctctggaggaatgtgaagtatacttctctgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 400 gatgactgggagcactcacactgacatctctggaggaatgtgaagtatacttctccgcat 341
Query: 241 caactctgaactactctgagagatgcaggaggcaggggcggggggaatacaaaggtagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caactctgaactactctgagagatgcaggaggcaggggcggggggaatacaaaggtagaa 281
Query: 301 cacagttcaagtgatacacatctctacttgggtatttgtggatgcaaactcttctctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cacagttcaagtgatacacatctctacttgggtatttgtggatgcaaactcttctctaaa 221
Query: 361 ttgagtttcaagaggatatttgttatggtttgaatgtgaagtatgctccattggctcctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 220 ttgagtttcaagaggatatttgttatggtttgaatgtgaagtatgctccatcggctcctg 161
Query: 421 tgttggacacttgatcactatctgatgttaatgttttgatagacttaacacttcaagaga 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 160 tgttggacacttgatcactatctggtgttaatgttttgatagacttaacacttcaagaga 101
Query: 481 aggtgacttaactggatgaaggtggagataggagggttcctgaagtgtctgctatcctag 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aggtgacttaactgaatgaaggtggagataggagggttcctgaagtgtctgctatcctag 41
Query: 541 ctagtcattaaactctaggttcagtaagtgatgctatttt 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 ctagtcattaaactctaggttcagtaagtgatgctatttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1024
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1014
Effective search space: 623610
Effective search space used: 623610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
