Query= MSMg01no515_e18.b1 MSMg01no515_e18.b1 CHROMAT_FILE:
MSMg01no515_e18.b1 PHD_FILE: MSMg01no515_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:33 2005
(594 letters)
>mm_chr5_105260463_105261456
Length = 994
Score = 745 bits (385), Expect = 0.0
Identities = 434/455 (95%), Gaps = 10/455 (2%)
Strand = Plus / Minus
Query: 5 gaattccatgacagcctgcgctacatcgagcaaccctttatcaataaccaaaacaaaaac 64
|||||||||||||||| | ||||||| ||| |||||| | ||||||||||||||||||||
Sbjct: 446 gaattccatgacagccagggctacatggaggaaccctgtctcaataaccaaaacaaaaac 387
Query: 65 aaggaggaggaggaagagaaggcaatgattgagttttaataaataaagttttatctatga 124
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 386 caggaggaagaggaagagaaggcaatgattgagtttaaataaataaagttttatctatga 327
Query: 125 agattagaatggctggatgtttccagaatggaaagagaaattaggaagttgatacaagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agattagaatggctggatgtttccagaatggaaagagaaattaggaagttgatacaagtt 267
Query: 185 gaaagtgtccaagtaagttattaaagatatgtaaatgataaaccttagaaatgatagaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaaagtgtccaagtaagttattaaagatatgtaaatgataaaccttagaaatgatagaca 207
Query: 245 ggagccgggcgtggtggcacacgcctttaatcccagcacttgggaggtagatgcaggtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggagccgggcgtggtggcacacgcctttaatcccagcacttgggaggtagatgcaggtag 147
Query: 305 atttctgagttcaa-agtaagcctggtatacacagtgagttccagaatagccaggggtat 363
|||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 146 atttctgagttcaaca-taagcctggtatacacagtaagttccagaatagccaggggtat 88
Query: 364 acaaagaaaccctgtctcaaaaaactgaaaaaaaaaaaaaaaaaaaaaagaaaaccaact 423
||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 87 acaaagaaaccctgtctcaaaaaaccgaaaaaaaaaaaaaa--------gaaaaccaact 36
Query: 424 ccaacattcattttaaaatgtctgagcttcatcta 458
|||||||||||||||||||||||||||||||||||
Sbjct: 35 ccaacattcattttaaaatgtctgagcttcatcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_e18.g1 MSMg01no515_e18.g1 CHROMAT_FILE:
MSMg01no515_e18.g1 PHD_FILE: MSMg01no515_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:33 2005
(672 letters)
>mm_chr5_104998478_104999550
Length = 1073
Score = 402 bits (208), Expect = e-116
Identities = 286/312 (91%), Gaps = 7/312 (2%)
Strand = Plus / Plus
Query: 9 tgttcttgtacatgagtgtctactgagtaagcaaaatgctcac-aaaatgtttatatcct 67
|||||||||||||||||||||||||||| ||||||||||| || |||| |||||| ||||
Sbjct: 209 tgttcttgtacatgagtgtctactgagttagcaaaatgctgacaaaaacgtttatctcct 268
Query: 68 tgaaatatctgtgtcattaggaagctggggttttcttctacaggagtagcaatattcgat 127
||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||| |||
Sbjct: 269 tgaaacatctgtgtcattaggaagctggggtttccttctacagaaatagcaatatttgat 328
Query: 128 ccatacttttcccctttgtagagagcagcattatagattgagatatgaacaacattgttg 187
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 329 ccatacttttcccctttgtagagagcagcattatagatttagaaatgaacaacattgttg 388
Query: 188 tgtctacatagttggatcatagtgttgctctgagaacttgccaagcttattaagactat- 246
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||
Sbjct: 389 agtctacatagttggatcacagtgttgctctgagaacctgccaagcttattaggac-atc 447
Query: 247 ttccagtatgcttttgagat-gatgttgcagctatccccatttgtattg-tttttgaaat 304
||||| |||||||||||| | |||||||||||||||| || ||| |||| ||||| ||||
Sbjct: 448 ttccaatatgcttttgag-tagatgttgcagctatccacaattggattgcttttt-aaat 505
Query: 305 taactaaagtac 316
||||||||||||
Sbjct: 506 taactaaagtac 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space: 703706
Effective search space used: 703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
