Query= MSMg01no515_l17.b1 MSMg01no515_l17.b1 CHROMAT_FILE:
MSMg01no515_l17.b1 PHD_FILE: MSMg01no515_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:10 2005
(623 letters)
>mm_chr5_151679730_151680752
Length = 1023
Score = 1108 bits (573), Expect = 0.0
Identities = 613/639 (95%), Gaps = 20/639 (3%)
Strand = Plus / Plus
Query: 5 gaattcagtcagcaggcaagtactttaattgcttccactagtttttcaaactggagttca 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattcagtcagcaggcaagtactttaattgcttccactagtttctcaaactggagttca 264
Query: 65 cagcatgcacttggcctgcttttctcagactagtccgcattttaatggtgagctgtgttc 124
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 cagcatgcatttggcctgcttttctcagactagtccgcattttaatggtgagctctgttc 324
Query: 125 ttgtattggaaaagaagtgcagtggtttgaatgagaacagaccccataggctcatatgtt 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgcattggaaaagaagtgcagtggtttgaatgagaacagaccccataggctcatatgtt 384
Query: 185 tgaatgcttggctctcagttggtggaactatttgggaaggatt----------------- 227
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 tgaatgcttggctctcagttggtggaactgtttgggaaggattaggaggtgtggcctttt 444
Query: 228 ---aggaggtgtgtcactgggggtgggctttgaagtttcagaagctcatgtcaggtttgg 284
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaggaggtgtgtcaccgggggtgggctttgaagtttcagaagctcatgtcaggtttgg 504
Query: 285 tctcaccccactccccacctctgcctgttgcctgtgggttaggatgtgagctcttagcta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctcaccccactccccacctctgcctgttgcctgtgggttaggatgtgagctcttagcta 564
Query: 345 ctgccccagcaccctgcccgcctgcccacctgcctgcccgccactatgcctgccaccctg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgccccagcaccctgcccgcctgcccacctgcctgcccgccactatgcctgccaccctg 624
Query: 405 cctgccaccctgcttcccgccatgatgatcatggactcatcccttgccactgtaagcaag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctgccaccctgcttcccgccatgatgatcatggactcatcccttgccactgtaagcaag 684
Query: 465 cctccagttaactcatcttttattgtgtttcatcacagcaacagaccagtaaccaagtca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctccagttaactcatcttttattgtgtttcatcacagcaacagaccagtaaccaagtca 744
Query: 525 agtagaattcaggaagaagggcagatgccaggcagaaccagggcagaacagtggaagact 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agtagaattcaggaagaagggcagatgccaggcagaaccagggcagaacagtggaagact 804
Query: 585 tacctcttagtacccactgctttcaggcctgtgactcag 623
|||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tacctcttagtacccactgctttcaggcctgtgactcag 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_l17.g1 MSMg01no515_l17.g1 CHROMAT_FILE:
MSMg01no515_l17.g1 PHD_FILE: MSMg01no515_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:10 2005
(639 letters)
>mm_chr5_151856467_151857505
Length = 1039
Score = 1141 bits (590), Expect = 0.0
Identities = 628/646 (97%), Gaps = 12/646 (1%)
Strand = Plus / Minus
Query: 1 ctttcaaatgacataaatagttgtgaatcacacttaagaatacaccctcggggcactgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctttcaaatgacataaatagttgtgaatcacacttaagaatacaccctcggggcactgtg 647
Query: 61 acccagtgcagcacagctctgaggtatacacagtctggagcctccttccagaagtacgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 acccagtgcagcacagctctgaggtatacacagtctggagcctccttccagaagtacgga 587
Query: 121 tgtaaacaaactgaagctgtatctcctttcaataagcacctgcctcgtagcttgacttct 180
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 586 tgtaaacaaactgaagctgtatcccctttcaataagcacctgcctcgcagcttgacttct 527
Query: 181 ttcttcctttcttttttcctgtccttttaacaatgcctactttcttcctgtgcactgtga 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttcttcctttctcttttcctgtccttttaacaatgcctactttcttcctgtgcactgtga 467
Query: 241 tgcaatttgaaatacttgccagatcggggaaaataaatgttcttaagactggttgtggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgcaatttgaaatacttgccagatcggggaaaataaatgttcttaagactggttgtggag 407
Query: 301 aatcacccaaatatagctaaacgtggcattttctagacactgcaaacttggaatgaagta 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 406 aatcacccaaatatagctaaacgtggcattttctagacactgcagacttggaatgaagta 347
Query: 361 actaacacattaaatagcaatctgcctggatatcttgatctgtggaattcagtgataagc 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 actaacacattaagtagcaatctgcctggatatcttgatctgtggaattcagtgataagc 287
Query: 421 ccaggaatgcaaagagcttttcttgagaattctgttcttatgaccacagaatgtacccgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccaggaatgcaaagagcttttcttgagaattctgttcttatgaccacagaatgtacccgt 227
Query: 481 gtttaatttcccctgtgatctatg-------catgtacagactccaactgtcctctaatg 533
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 226 gtttaatttcccctgtgatctatgcagctgacatgtacagactccaactgtcctctaatg 167
Query: 534 gcttggaattctccccatgttcctgtagttttttttttttttttccttttctctcttttt 593
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 166 gcttggaattctccccatgttcctgtagtttttttttttttt---cttttctct-ttttt 111
Query: 594 ttttccccaagttaaggttgctttcatttatagcaacaagcaagag 639
|||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 110 tttt-cccaagttaaggttgctttcatctatagcaacaagcaagag 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
