TTTATACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACACGA
TCCGCGGAATTCTTTGTTTATCTCTGAGCCCCATTTTTGAATGGGGTTAT
TTGATTTTCTTGAGTCCACCTTCTTGAGGTCTTTATATATATTGGATAAT
AGTCCCCTATCTGATTTAGAATAGGTAAAGATCCTTTCCCACTCTGTTGG
TGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCA
ATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAAGCCATT
GCTGTTCTATTTAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTT
CCCTACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTGAAGTT
CCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCA
TTTCTCATTCTTCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGAA
GAAGATGCTGTCTTTTTTCCACTGGATGGTTTTTGCTCCCTTGTCAAATA
TCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTC
CACTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTTATCA
CAATTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAG
GTTTCTTTATCCTTGAGCAGAGTTTTTGCTATCCTAGGTTTTT

TTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCTTTACTCAGAAATA
ACTTTTGTGGTCTGGGTAGTGAAAGAAAATGGCCAACCATTCAATGACAA
TGCAGGAAGGACATCACCCGCTGTGCCACCATGTGCAAACATGGAAAACA
ACTGAGCAAGAGGGCTCCAAGGGAAGTTCAGTGAAAACAGAAGAAATTGA
AATCAAATACTGGGCATGGCTGCAGTAGAGGAAAATACAATAAGCTATTT
GGTCAGACTCATTATAACCAAGCCTGGCCAAAGAAGAATAGATATGAAGA
GTTTTGGATGGCAAAAGAAACTGATTTTCCTGCCAAATAAACAGGGCTGA
TGAAGAGAAAAGAATGCTTTAGTGTGCCATTATAAATAGGAGAAAATATC
ATTTTTAAAAAAATAAGGACAAGGATGTGGGGATAAGTGCTGAGCTTAAG
ATCATTGAATGAGTTGCTAGAGGAATCTCTCGGTAGAGCTAACTAGTAAG
GGAAAACTGCACTAAGAAATCACTACTAAGAGCAAATTGACAGAGGCCCC
CATTTGCCTTCTCCTCATATTTTCATTCCTATTGATGGAATTTCTGTATT
AAGTTGGGTTTTGGGAAGCTTTTCCTCCCATCCAGATTTTGACTGGCAAA
ATTTTCTCCAAACAGACATTCTCTAAAGCTTGATATGTAACATGTTTT

Query= MSMg01no516_d16.g1 MSMg01no516_d16.g1 CHROMAT_FILE:
MSMg01no516_d16.g1 PHD_FILE: MSMg01no516_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:52 2005
         (630 letters)



>mm_chr5_40372473_40373502
          Length = 1030

 Score = 1180 bits (610), Expect = 0.0
 Identities = 625/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgctttactcagaaataacttttgtggtctgggtagtgaaagaaaatggccaaccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgctttactcagaaataacttttgtggtctgggtagtgaaagaaaatggccaaccatt 260

                                                                       
Query: 61  caatgacaatgcaggaaggacatcacccgctgtgccaccatgtgcaaacatggaaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgacaatgcaggaaggacatcacccgctgtgccaccatgtgcaaacatggaaaacaa 320

                                                                       
Query: 121 ctgagcaagagggctccaagggaagttcagtgaaaacagaagaaattgaaatcaaatact 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctgagcaagagggctccaagggaagttcagtgaaaacagaaggaattgaaatcaaatact 380

                                                                       
Query: 181 gggcatggctgcagtagaggaaaatacaataagctatttggtcagactcattataaccaa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gggcatggctgcagtagaggaaaatacgataagctatttggtcagactcattataaccaa 440

                                                                       
Query: 241 gcctggccaaagaagaatagatatgaagagttttggatggcaaaagaaactgattttcct 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctggccaaagatgaatagatatgaagagttttggatggcaaaagaaactgattttcct 500

                                                                       
Query: 301 gccaaataaacagggctgatgaagagaaaagaatgctttagtgtgccattataaatagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaaataaacagggctgatgaagagaaaagaatgctttagtgtgccattataaatagga 560

                                                                       
Query: 361 gaaaatatcatttttaaaaaaataaggacaaggatgtggggataagtgctgagcttaaga 420
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gaaaatgtcatttttaaaaaaataaggacaaggatgcggggataagtgctgagcttaaga 620

                                                                       
Query: 421 tcattgaatgagttgctagaggaatctctcggtagagctaactagtaagggaaaactgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcattgaatgagttgctagaggaatctctcggtagagctaactagtaagggaaaactgca 680

                                                                       
Query: 481 ctaagaaatcactactaagagcaaattgacagaggcccccatttgccttctcctcatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaagaaatcactactaagagcaaattgacagaggcccccatttgccttctcctcatatt 740

                                                                       
Query: 541 ttcattcctattgatggaatttctgtattaagttgggttttgggaagcttttcctcccat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcattcctattgatggaatttctgtattaagttgggttttgggaagcttttcctcccat 800

                                         
Query: 601 ccagattttgactggcaaaattttctccaa 630
           ||||||||||||||||||||||||||||||
Sbjct: 801 ccagattttgactggcaaaattttctccaa 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)