NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACATCTTAATCTGAAGGCAGTCAGGAGAAGACTCACATCC
TCAGGTAGCTAGGAGTAAGCTCCCTTCCACAAGGGGTAGAGCCCCAGGAT
AGGAGGAGACCTACAAACACAGGCCACCTCCCCATTTCCTCCAACAGAGC
CACACCTTCTAACAGTACTACTCCCTATAGGCCGGGCATATTCAAACCAC
CACATCATTTGAAGGAAACCCTCCATCAAGATATACTTGGTTGCCAAAGG
CACCTCTGATCCATTTATAGTGCTTAGTGTAGAGAAGGCTACCAACCAAT
AACTATTTTCCCTTTAATACTGATTATTTTGGTGTGGAGTCTGCAAAGGT
CCAGAATGTTGAGAAGGAAATGAAGCCATGTAGAAAAATACCTTCAACTC
CACATTATTCTTTCTTCTGTGAAATTTGGTTTGGCCAAAAATCTGTAGAG
AGACATAGTTGCTCACACGTAAGAACTGAGCTGTGAACTCCTAGGTATGC
ATATCAAGCTACTCTTGTAATGAGATGCTGATTGTCTCATATTAACATTT
GCTAGCTAATTACAGTTAATTGTGAACATTAAATTCATATGTGATTGCTT
GTAGCACTGCCAAATTGGTATGTGTAGATAAAGAGGAAGGAGCTATACGA
ATTCACTCATGCCTGTTAGTGAGTACTGTGATAATTTGGAACACTGGAGT
TTTGT

NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACTAAACCTATCTGGTCCTG
GGCTTTTTTTAGTTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGG
GATATAGGGCTGTTTAGGTCATTAATCTGATCCTGATTTAACTTTCGTAC
CTGGTATCTGTCTAGAAATTTGTTCATTTCATCCAGGTTTTCCAGTTTTA
TTGAGTAAAGCCTTTTGTAGAAGGATCTGATGGTGTTCTGGATTTTTTCA
GGATCTGCTGTCATGTCTCCCTTTTCATTTCTGATTTTGTTAATTAGGAT
GCTGTCCCTGTGCCCTCTAGTGAGTCTGGCTAAGGGTTTATCTATCTTGT
TGATTTTCTAAAGAACTAGCTCCTCATTTCGTTGATTCTTTGAATAGTTC
TTCTTGTTTCCACTTGGTTGATTTTTCCTCTGAGTTTGATTATTTCCTGC
TGTCTACTCCTCTTGGGTGAATTTGCTTCCTTTTGTTCTAGAGATTGTCT
GTGTGCTGTCAAGCTGCTAATGTGTGCTCTCACTAGTTTCTTTTTGGAGG
CACTCAGAGCTATGAGTTTCCTCTTAGAAATGCTTTCATCGTGTCCCATA
AGTTTGGGTATGTTGTGGCTTCATTTTCATTAAACTCTAAAAAGTCTTTA
ATTTCTTTCTTTATTCCTTCCTTGATGAAGGTATCATTTAAGAGAGTGTT
GTTCAGT

Query= MSMg01no516_h01.b1 MSMg01no516_h01.b1 CHROMAT_FILE:
MSMg01no516_h01.b1 PHD_FILE: MSMg01no516_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:10 2005
         (701 letters)



>mm_chr5_17127795_17128895
          Length = 1101

 Score = 1340 bits (693), Expect = 0.0
 Identities = 696/697 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacatcttaatctgaaggcagtcaggagaagactcacatcctcaggtagctagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacatcttaatctgaaggcagtcaggagaagactcacatcctcaggtagctagg 264

                                                                       
Query: 65  agtaagctcccttccacaaggggtagagccccaggataggaggagacctacaaacacagg 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtaagctcccttccacaatgggtagagccccaggataggaggagacctacaaacacagg 324

                                                                       
Query: 125 ccacctccccatttcctccaacagagccacaccttctaacagtactactccctataggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacctccccatttcctccaacagagccacaccttctaacagtactactccctataggcc 384

                                                                       
Query: 185 gggcatattcaaaccaccacatcatttgaaggaaaccctccatcaagatatacttggttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggcatattcaaaccaccacatcatttgaaggaaaccctccatcaagatatacttggttg 444

                                                                       
Query: 245 ccaaaggcacctctgatccatttatagtgcttagtgtagagaaggctaccaaccaataac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaaaggcacctctgatccatttatagtgcttagtgtagagaaggctaccaaccaataac 504

                                                                       
Query: 305 tattttccctttaatactgattattttggtgtggagtctgcaaaggtccagaatgttgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattttccctttaatactgattattttggtgtggagtctgcaaaggtccagaatgttgag 564

                                                                       
Query: 365 aaggaaatgaagccatgtagaaaaataccttcaactccacattattctttcttctgtgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggaaatgaagccatgtagaaaaataccttcaactccacattattctttcttctgtgaa 624

                                                                       
Query: 425 atttggtttggccaaaaatctgtagagagacatagttgctcacacgtaagaactgagctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttggtttggccaaaaatctgtagagagacatagttgctcacacgtaagaactgagctg 684

                                                                       
Query: 485 tgaactcctaggtatgcatatcaagctactcttgtaatgagatgctgattgtctcatatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaactcctaggtatgcatatcaagctactcttgtaatgagatgctgattgtctcatatt 744

                                                                       
Query: 545 aacatttgctagctaattacagttaattgtgaacattaaattcatatgtgattgcttgta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacatttgctagctaattacagttaattgtgaacattaaattcatatgtgattgcttgta 804

                                                                       
Query: 605 gcactgccaaattggtatgtgtagataaagaggaaggagctatacgaattcactcatgcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcactgccaaattggtatgtgtagataaagaggaaggagctatacgaattcactcatgcc 864

                                                
Query: 665 tgttagtgagtactgtgataatttggaacactggagt 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 865 tgttagtgagtactgtgataatttggaacactggagt 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)