Query= MSMg01no517_b06.b1 MSMg01no517_b06.b1 CHROMAT_FILE:
MSMg01no517_b06.b1 PHD_FILE: MSMg01no517_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:02 2005
(661 letters)
>mm_chr5_121047558_121048618
Length = 1061
Score = 1216 bits (629), Expect = 0.0
Identities = 650/657 (98%)
Strand = Plus / Minus
Query: 5 gaattccagaccagcctgctctacagagtgagttctaggacagccagcgctacatcgaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 gaattccagaccagcctgctctacagagtgagttctaggacagccagcgctacatcgaga 991
Query: 65 aaccctgtctcaaaacaaacaaaataattattcaccaggtgctgtggggctggccagtaa 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 990 aaccctgtctcaaaacaaacaaaataattactcaccaggtgctgtggggctggccggtaa 931
Query: 125 tgccaacacatggaagaaaagacaagaaagaaacgggagggagggaggaggctagtccat 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 930 tgccaacacatggaagaaaagacaagaaagaaaagggagggagggaggaggctagtccat 871
Query: 185 tttcctgaaaatcaaatcaagtcctgaactagaggctctcagcacgtgggtcaagaccca 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 870 tttcctgaaaatcaaatcaagtcctgaactagaggttctcagcacgtgggtcaagaccca 811
Query: 245 ccccccacgaatgggtcacatatcagatatcttgcatatcaagatagttacattgcagtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ccccccacgaatgggtcacatatcagatatcttgcatatcaagatagttacattgcagtt 751
Query: 305 atgaggtagcagtgaaataattttatggctggtgatctgatcagtagcacatgagaaact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atgaggtagcagtgaaataattttatggctggtgatctgatcagtagcacatgagaaact 691
Query: 365 gtgttaaagggtcagggctctgttctgaaacagaaagggcatcagggtaacatctgggat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gtgttaaagggtcagggctctgttctgaaacagaaagggcatcagggtaacatctgggat 631
Query: 425 gtcactaaatccaaggtttggctaacagaactgtatggatagtgacttacatatttgttt 484
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gtcactaaatccaaggtttggttaacagaactgtatggatagtgacttacatatttgttt 571
Query: 485 ctgtttgagacagagtctcatgtagaccaggctggcccaggacttgttgtgtagcaactc 544
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 570 ctgtttgagacagagtctcatgtagcccaggctggcccaggacttgttgtgtagcaactc 511
Query: 545 ctgccttcatccccaaagcctgaggattgcaggcatgtgtggtcattggttaccccgggc 604
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctgcctccatccccaaagcctgaggattgcaggcatgtgtggtcattggttaccccgggc 451
Query: 605 tggcaatgttactttcttagttctgacctataaagtaacatcagggggagctttcag 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tggcaatgttactttcttagttctgacctataaagtaacatcagggggagctttcag 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_b06.g1 MSMg01no517_b06.g1 CHROMAT_FILE:
MSMg01no517_b06.g1 PHD_FILE: MSMg01no517_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:02 2005
(425 letters)
>mm_chr5_120977793_120978617
Length = 825
Score = 785 bits (406), Expect = 0.0
Identities = 422/430 (98%), Gaps = 5/430 (1%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacacagagaaaccctgtctcaaaaaacc-----aaaaaaaaaga 55
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 196 caggacagccagggctacacagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaga 255
Query: 56 attggaagcctctgaagggtggcctgggtatgtttctggtgtggtatggtgaatggcaaa 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 attggaagcctctgaagggtggcctgggtatgtttctggtgtggtatggtgaatggcaaa 315
Query: 116 gtctaccctgcagatgagccgaaccccaagccatttgcctattcgggcttctttttactt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtctaccctgcagatgagccgaaccccaagccatttgcctattcgggcttctttttactt 375
Query: 176 tgaagtgaattgggtttatttttattgagctattactcacatactcttcagtctttatgt 235
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 376 tgaagtgaattggatttatttttattgagctattactcacatacttttcagtctttatgt 435
Query: 236 tttgtttttatttttgtttgctcccttattttctgtttttttcagatttatttattttta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttgtttttatttttgtttgctcccttattttctgtttttttcagatttatttattttta 495
Query: 296 tgtgtatgactggcttgcacaagtgtctgtgcaccatgtgcacgcctggtaccctaagag 355
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgtgtatgactggcttgcacatgtgtctgtgcaccatgtgcacgcctggtaccctaagag 555
Query: 356 gccagaagagggtgctggatcccgtgcaacaggagtaacctgaggttatgggccacccaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gccagaagagggtgctggatcccgtgcaacaggagtaacctgaggttatgggccacccaa 615
Query: 416 tgtgggcacc 425
||||||||||
Sbjct: 616 tgtgggcacc 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
