Query= MSMg01no517_d12.b1 MSMg01no517_d12.b1 CHROMAT_FILE:
MSMg01no517_d12.b1 PHD_FILE: MSMg01no517_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:13 2005
(662 letters)
>mm_chr5_131338237_131339297
Length = 1061
Score = 870 bits (450), Expect = 0.0
Identities = 483/494 (97%), Gaps = 1/494 (0%)
Strand = Plus / Minus
Query: 139 tccaagttgactgaatgacacgttcatgacactgccgccatgtgaagtcatcgagtggac 198
|||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||
Sbjct: 1061 tccaagttgactgaatgacatgttcatgacactgccaccatgtgaagtcgtagagtggac 1002
Query: 199 ttttatagttatcagacaaaagacagccataaatcagtgcagttgctggatatgttggtg 258
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1001 ttttatagttatcagacaaaagacagccataaatcagtgcagttgctgaatatgttggtg 942
Query: 259 aggacaggggtgaggtggatgagagcagagccataggtctgagctgttatctgatgacat 318
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 941 aggacaggggtgaggtggacaagagcagagccataggtctgagctgttatctgatgacat 882
Query: 319 ctttagctttgagcacagtgggagctgagggtctgctaaagggatgcattccagagcttt 378
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 881 ctttagctttgaggacagtgggagctgagggtctgttaaagggatgcattccagagcttt 822
Query: 379 cattcaattaccagagattagactggaatactgggggggtctttgagaatgacagagcca 438
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 821 cattcaattaccagagattagactggaatact-ggggggtctttgagaatgacagagcca 763
Query: 439 ggtgagattggctttgagagttagggtccccaaaatctcaatggccaccaaagccaccct 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ggtgagattggctttgagagttagggtccccaaaatctcaatggccaccaaagccaccct 703
Query: 499 tagccaatggcttccaggttctcgtctcacaaatctaaagcatgaaattgatgatccacg 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 702 tagccaatggcttccaggttctcgtctcacaaatctaaagcatgaaattgatgatccatg 643
Query: 559 gagggtgagctgtgaccttataaggaagtctgttaaagatacataggtaggggctcaaga 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gagggtgagctgtgaccttataaggaagtctgttaaagatacataggtaggggctcaaga 583
Query: 619 ttgtgtgtgtgtgt 632
||||||||||||||
Sbjct: 582 ttgtgtgtgtgtgt 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_d12.g1 MSMg01no517_d12.g1 CHROMAT_FILE:
MSMg01no517_d12.g1 PHD_FILE: MSMg01no517_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:13 2005
(645 letters)
>mm_chr5_131141105_131142149
Length = 1045
Score = 1193 bits (617), Expect = 0.0
Identities = 638/645 (98%)
Strand = Plus / Plus
Query: 1 attgtttgtctgcacatttttagcataccagcaaaggcgaaattccagctccctttatcg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 attgtttgtctgcacatttttagcataccagcaaaggcgagattccagctccctttatcg 260
Query: 61 tgtcaaatgggaagagaaaaattgatttccactcagcatttcatcgactgttccacccca 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaaatggggagagaaaaattgatttccactcagcatttcatcgactgttccacccca 320
Query: 121 tttggtagattaatcttccctttcccaccagcttgccacacctccctggtcctcccaagg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tttggtagattaatcttccctttcccaccagcttgccacacctccttggtcctcccaagg 380
Query: 181 gtttcatctaagaggcagtgtgttcatggacagtctgtgctgagttattggcatcctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcatctaagaggcagtgtgttcatggacagtctgtgctgagttattggcatcctgat 440
Query: 241 gatgacatctatttggccactgggcataggttttgaatgagtgctccttgggaacacgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgacatctatttggccactgggcataggttttgaatgagtgctccttgggaacacgga 500
Query: 301 tgctctgagagtagataaatttctgggtcttcaatctggcatgctactgggtgtggattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctctgagagtagataaatttctgggtcttcaatctggcatgctactgggtgtggattc 560
Query: 361 accaaccagagttaaggtaaggaggtggaaagctgttggctgtgttgccagtttaaatgg 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accaatcagagttaaggtaaggaggtggaaagctgttggctgtgttgccagtttaaatgg 620
Query: 421 ctgtaagggttcctaatgccatgttgatgacttgctgagagttactcaatgccctgtggg 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ttgtaagggttcctaatgccatgttgatgacttgctgagagtcactcaatgccctgtggg 680
Query: 481 ttcagtttgacctgtaaagttgacttgacaaacaccttttggctagcaccagctctagca 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 ttcagtttgacctgtaaagttgacttgacaaacaccttttggttagcaccagctctagca 740
Query: 541 tgaaaacagaataaaataccacacaaaaaccaattgatgcttaaccgaacaagggaaaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaaacagaataaaataccacacaaaaaccaattgatgcttaaccgaacaagggaaaac 800
Query: 601 aatcaggagacatcacttattcattttctaagcatattctgaata 645
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatcaggagacatcacttattcattttctaagcatattctgaata 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
