BAC Information

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BAC

Clone NameMSMg01-517L07
Chromosome5 (Build37)
Map Location 31,493,571 - 31,494,218
singlet/doubletsinglet
Overlap geneEif2b4
Upstream geneHadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2
Downstream geneSnx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517L07.T7 (MSMg01no517_l07.b1)MSMg01-517L07.TJ (MSMg01no517_l07.g1)
ACCAG589390AG589391
length755831
length of high quality
(start - end)		657 (61 - 717)162 (74 - 235)
definitionCHROMAT_FILE: MSMg01no517_l07.b1 PHD_FILE: MSMg01no517_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:53 2005CHROMAT_FILE: MSMg01no517_l07.g1 PHD_FILE: MSMg01no517_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGCCTCTGTCAAGAAAGGGAAAAAAAAAAAATAGATAAGGTAAAAGGGA
AACTTTGGTTGGGGCAAAGAGATCACCGTCCTAGAGCCCAGGCACCTCTT
CCCTCTGTATCTCATAGACCCAATCAGAGAACTCCCAGGACCTGGTAGTC
AGCTGGGAGGTACTGCTGGGGAGAAACTTCCAGCTGGCCGGAGTAAGGCA
GAACTTCGCGCCGAAAGGAGAGCCAAGCAGGAGGCAGAGCGGGCCCTGAA
ACAGGCAAGAAAAGGGGAACAAGGAGGCGTCCCTCCTCAGGCCTGCCCCA
GCACTGCTGGAGAAACCACCTCAGGTATCTCTCTCCTCTTCATTCTCACA
CTCCACTTACCCAAACGCTCCCGTTTCGAGATGTATAGAGTCTTGAAAGC
ATCTCCCTAACTTTTAGGAGTGAAGCGTGTCCCTGAGCACACCCCAGCTG
ATGACCCCACACTTCTGAGGAGGCTCCTTAGAAAGCCAGATCGACAACAG
GTAGGAAGTGGGTTTGGTACCTGGAGAATTGCCCTGGGCAAAGAAAAGAT
CTGGAAAAGCATGGAGTATTGGGATCAAATAGCCCACCCAGTCCCGTTTG
ATGATGTCTCTTTGTTTCATGGAGGTTCCTACACGAAAGGATTACGGATC
CAAAGTCAGTCTCTTCTCCCACCTGCCTCAGTACAGCAGACAAAGCTCCT
TGACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCAGAAGGCAGAGGCAGGTGGATCT
GTCAATCTGAGAGTAGCCTGGTTTGTAGAGCCAGTTCCAGGGTGGCCAAG
GCTACATAGAGAAACACTGTCTTGGAAAGCAGATAAATGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTCTTCCCTTATC
CTTCTCCTTTTTCCTTCCTCCTTTCCTTTCTTTTTTCTTCTCCTTTCTTT
TCCTCCTTCTTCTTCTTTCCTTTTTTCTTCCTTCCCTCTTTTTTTTTTCT
CCCTTTCCTTCTCCTTTCTTTTCTTTCTCCCTCCTTTTTCCCTTTCCTCT
CTTCCCCCCCTCTCCCCCCCCCCTTTTCCCTTTTCTTTCCTCTCTCCCTT
TTTTTTTTTTTCCCAATCTTTTTTACCTTTTTTTTCCCCATCCTTTTTTT
CTTTTTTCTTCTTCCTCTTCACCTTTTTCTTTCTTCCCACATTCACTTTT
CTTCTACTCTTTTTTCTTTTCCTCTATTCACCTATTTCTCCAATATCCTT
ACTATATATCCTCTTTCTTCCCCTCTCTTATTCTTCTCTTTTTCACCCCC
TTTTTTCTTCGGATTTTTTTATACTTTAATTCTTTTTTTCTTATATACGC
CTTCATTTCTTTTCTCTTGTATATTCCCCTCCCCTCTCCTTTCTTTTCCC
CATCTTCCTATTTTTTTCCCCCCTTTCTCCTCTCCTGCTTCCTCTTATCT
TTTCTTTTCTTTTTTTTATCCCCTTGTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_l07.b1 MSMg01no517_l07.b1 CHROMAT_FILE:
MSMg01no517_l07.b1 PHD_FILE: MSMg01no517_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:53 2005
         (657 letters)



>mm_chr5_31493340_31494396
          Length = 1057

 Score = 1205 bits (623), Expect = 0.0
 Identities = 645/657 (98%), Gaps = 9/657 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaaagggaaaaaaaaaaaatagataaggtaaaagggaaactttggttggggcaaaga 60
           ||||||||||    ||||||||||||     |||||||||||||||||||||||||||||
Sbjct: 879 caagaaaggg----aaaaaaaataga-----taaaagggaaactttggttggggcaaaga 829

                                                                       
Query: 61  gatcaccgtcctagagcccaggcacctcttccctctgtatctcatagacccaatcagaga 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 828 gatcaccgtcctagagcccaggcacctcttccctctgtatttcatagacccaatcagaga 769

                                                                       
Query: 121 actcccaggacctggtagtcagctgggaggtactgctggggagaaacttccagctggccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 actcccaggacctggtagtcagctgggaggtactgctggggagaaacttccagctggccg 709

                                                                       
Query: 181 gagtaaggcagaacttcgcgccgaaaggagagccaagcaggaggcagagcgggccctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gagtaaggcagaacttcgcgccgaaaggagagccaagcaggaggcagagcgggccctgaa 649

                                                                       
Query: 241 acaggcaagaaaaggggaacaaggaggcgtccctcctcaggcctgccccagcactgctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acaggcaagaaaaggggaacaaggaggcgtccctcctcaggcctgccccagcactgctgg 589

                                                                       
Query: 301 agaaaccacctcaggtatctctctcctcttcattctcacactccacttacccaaacgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agaaaccacctcaggtatctctctcctcttcattctcacactccacttacccaaacgctc 529

                                                                       
Query: 361 ccgtttcgagatgtatagagtcttgaaagcatctccctaacttttaggagtgaagcgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ccgtttcgagatgtatagagtcttgaaagcatctccctaacttttaggagtgaagcgtgt 469

                                                                       
Query: 421 ccctgagcacaccccagctgatgaccccacacttctgaggaggctccttagaaagccaga 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ccccgagcacaccccagctgatgaccccacacttctgaggaggctccttagaaagccaga 409

                                                                       
Query: 481 tcgacaacaggtaggaagtgggtttggtacctggagaattgccctgggcaaagaaaagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcgacaacaggtaggaagtgggtttggtacctggagaattgccctgggcaaagaaaagat 349

                                                                       
Query: 541 ctggaaaagcatggagtattgggatcaaatagcccacccagtcccgtttgatgatgtctc 600
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctggaaaagcacggagtattgggatcaaatagcccacccagtcccgtttgatgatgtctc 289

                                                                    
Query: 601 tttgtttcatggaggttcctacacgaaaggattacggatccaaagtcagtctcttct 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tttgtttcatggaggttcctacacgaaaggattacggatccaaagtcagtctcttct 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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