BAC Information

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BAC

Clone NameMSMg01-518I10
Chromosome5 (Build37)
Map Location 88,427,997 - 88,428,672
singlet/doubletsinglet
Overlap genenone
Upstream geneUgt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik
Downstream geneSmr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518I10.T7 (MSMg01no518_i10.b1)MSMg01-518I10.TJ (MSMg01no518_i10.g1)
ACCAG590014AG590015
length757753
length of high quality
(start - end)		711 (47 - 757)676 (78 - 753)
definitionCHROMAT_FILE: MSMg01no518_i10.b1 PHD_FILE: MSMg01no518_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:57 2005CHROMAT_FILE: MSMg01no518_i10.g1 PHD_FILE: MSMg01no518_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCAGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTTTATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCAATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGTAACATGCAGTTTTTATCACAATTGC
TCTGTAGTAAAGCTTTAGGTCAGGCATAGTGATTCCACCAGAGGTTCTTT
TATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATG
AATTTGC

NGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTGGTTTATAGAGCAGATTTA
AAGTGAAATTTCATAGCTGTTTATATTCATAAGCTTGGAACATTTAGATT
GTATGCAAAGACCAGTTTCCTGCTTGAGATAAAGTAATGTGTTTTCTGTC
TTAACATAAAGAGGAATTTTTCTTATAACTTTTAGTAGGACAGAAGATGG
TCCTTATAAATAATTACTATGATTATCGTTTGTTGATAATATGGGTTTTA
AATCTGATTTCACTGTCCTGTTAACTTTGGGTGCTTGGAAATTACAAAAT
AGTTTAAACTTCCACAGAGTTTTAAAAATCATAATCTATCTTCTAAAGTT
TGATAAATATTTAGGAAAGTATTAATCTAGAGACTAATAAATTTTTAAGA
ATAATATAAAATAATAACATTTATGTAATTTTCCAATGGAAAAATAATAG
CTTTTGCTTATGCATTTCAACAGAAATAAGAGTTAAGTCACAGGGCAAAA
GAGATCACATGTCAAATAAATGTCAATGCATTTTTGTGTGGAAGTGTGCT
AATCCAATAATATTAGGAAAATATTACATATGTCTCTATTAAAACTATAG
CATGTTCTACTCTCCTGTGGATTTCCTGTAATGAGAGACATCAGCTCTAT
GAAAATATTCTTCCAGAGAATATTTGGTACAGTCGTTGATAGCCATGGGT
TGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_i10.g1 MSMg01no518_i10.g1 CHROMAT_FILE:
MSMg01no518_i10.g1 PHD_FILE: MSMg01no518_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:57 2005
         (676 letters)



>mm_chr5_88427797_88428872
          Length = 1076

 Score = 1176 bits (608), Expect = 0.0
 Identities = 659/676 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttggtttatagagcagatttaaagtgaaatttcatagctgtttatattcataagcttg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ctttggtttatagagcagatttaaagtgaaattttatagctgtttatattcataagcttg 260

                                                                       
Query: 61  gaacatttagattgtatgcaaagaccagtttcctgcttgagataaagtaatgtgttttct 120
           ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 261 gaacatttagattatatgcaaagcccagtttcctgcttgagataaagtaatgtgctttct 320

                                                                       
Query: 121 gtcttaacataaagaggaatttttcttataacttttagtaggacagaagatggtccttat 180
           | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgaacataaagagggatttttcttataacttttagtaggacagaagatggtccttat 380

                                                                       
Query: 181 aaataattactatgattatcgtttgttgataatatgggttttaaatctgatttcactgtc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 aaataattactatgattatcgtttgttgataatatgagttttaaatctgatttcactgtc 440

                                                                       
Query: 241 ctgttaactttgggtgcttggaaattacaaaatagtttaaacttccacagagttttaaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ctgttaactttgggtgcttggaaattacaaaatagtttaaacttccacagagtttttaaa 500

                                                                       
Query: 301 atcataatctatcttctaaagtttgataaatatttaggaaagtattaatctagagactaa 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 atcataatctatcttctaaagtttgataaatatttaggaaaatattaatctagagactaa 560

                                                                       
Query: 361 taaatttttaagaataatataaaataataacatttatgtaattttccaatggaaaaataa 420
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatttttaagaataatataagataataacatttatgtaattttccaatggaaaaataa 620

                                                                       
Query: 421 tagcttttgcttatgcatttcaacagaaataagagttaagtcacagggcaaaagagatca 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagcttttgtttatgcatttcaacagaaataagagttaagtcacagggcaaaagagatca 680

                                                                       
Query: 481 catgtcaaataaatgtcaatgcatttttgtgtggaagtgtgctaatccaataatattagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgtcaaataaatgtcaatgcatttttgtgtggaagtgtgctaatccaataatattagg 740

                                                                       
Query: 541 aaaatattacatatgtctctattaaaactatagcatgttctactctcctgtggatttcct 600
           |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 741 aaaatattacatatgtctctatcaaaacaatagcatgttctactgtcctgtggatttcct 800

                                                                       
Query: 601 gtaatgagagacatcagctctatgaaaatattcttccagagaatatttggtacagtcgtt 660
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 801 gtaatgagagacatcagctctatgaaaatatccttccagagaatatttggtacagtcgtt 860

                           
Query: 661 gatagccatgggttgg 676
           ||||||||||||||||
Sbjct: 861 gatagccatgggttgg 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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