Query= MSMg01no518_m04.b1 MSMg01no518_m04.b1 CHROMAT_FILE:
MSMg01no518_m04.b1 PHD_FILE: MSMg01no518_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:16 2005
(636 letters)
>mm_chr5_81771214_81772249
Length = 1036
Score = 1185 bits (613), Expect = 0.0
Identities = 625/629 (99%)
Strand = Plus / Minus
Query: 5 gaattcaaagtcataagatatctcatgaattcagtcttttatttgatattgtccattaaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gaattcaaagtcaaaagatatctcatgaattcagtcttttatttgatattgtccattaaa 774
Query: 65 gctaaacttgtttttagctgcaggttttttgtgtgtgcatttcaatgcagctagtgcata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gctaaacttgtttttagctgcaggttttttgtgtgtgcatttcaatgcagctagtgcata 714
Query: 125 tatttacctaaaacttgcactttggtttttaaagaagcaaacaagcaaaaaatcactgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tatttacctaaaacttgcactttggtttttaaagaagcaaacaagcaaaaaatcactgtt 654
Query: 185 aagtgtaggagtcttacgaccaaactcaaattaataaaagttttatactgtttctgcaaa 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aagtgtaggagtcttatgaccaaactcaaattaataaaagttttatactgtttctgcaaa 594
Query: 245 taccaaataatattagattgggcaaagagtacctatagtctcttctatccattgatgtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 taccaaataatattagattgggcaaagagtacctatagtctcttctatccattgatgtta 534
Query: 305 tagatatggtatattacaatttatctcctgtcataattttataggtagcaaacaagagct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tagatatggtatattacaatttatctcctgtcataattttataggtagcaaacaagagct 474
Query: 365 tataggtaaagtcactataatcactgtaagagcagtagagatgattagcctatgatacgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tataggtaaagtcactataatcactgtaagagcagtagagatgattagcctatgatacgt 414
Query: 425 gcagcatatcactgctgttgtaattgagaacattcactgtgtgactgaagaaaagataca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcagcatatcactgctgttgtaattgagaacattcactgtgtgactgaagaaaagataca 354
Query: 485 aaatcagtagataaatcatatgtgttaaattatttactgtacagtcacgtagtttgagag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaatcagtagataaatcatatgtgttaaattatttactgtacagtcacgtagtttgagag 294
Query: 545 acatgtagaattagacaaatggctgagcacttgcaggtagaacacttttcattagtgtag 604
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 293 acatgtagaattagacaaatggctgagcgcttgcaggtaggacacttttcattagtgtag 234
Query: 605 agagccctgactttgatctctgtaaaaga 633
|||||||||||||||||||||||||||||
Sbjct: 233 agagccctgactttgatctctgtaaaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_m04.g1 MSMg01no518_m04.g1 CHROMAT_FILE:
MSMg01no518_m04.g1 PHD_FILE: MSMg01no518_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:16 2005
(627 letters)
>mm_chr5_81580615_81581644
Length = 1030
Score = 1185 bits (613), Expect = 0.0
Identities = 625/631 (99%), Gaps = 5/631 (0%)
Strand = Plus / Plus
Query: 1 cagggatgtgggtctagcctgggaattttcgtgagttgtatttccattttagaggaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggatgtgggtctagcctgggaattttcgtgagttgtatttccattttagaggaagca 260
Query: 61 ggaaggaaatgaaaaagctaccatgtggaacagagctgctcgttggagatattagttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaggaaatgaaaaagctaccatgtggaacagagctgctcgttggagatattagttctt 320
Query: 121 cacagcaaagcttaaaggaatagatttggcatgaaaggaaactggaaggaaacgtattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagcaaagcttaaaggaatagatttggcatgaaaggaaactggaaggaaacgtattaa 380
Query: 181 agtttaattaggaagaagagttagaatcctggctattaaaatagctcttcgatgaattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttaattaggaagaagagttagaatcctggctattaaaatagctcttcgatgaattct 440
Query: 241 gtcaagggaaaacctcctctctgatgcaagtagaagtccactgcatgaatcaaagaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcaagggaaaacctcctctctgatgcaagtagaagtccactgcatgaatcaaagaaaaa 500
Query: 301 aaatgtccaaagtaagatccctgtgtatacctggggatgctgagaatggcatctatcaat 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaa-gtccaaagtaagatccctgtgtatacctggggatgctgagaatggcatctatcaat 559
Query: 361 gtttccaggttgattgcttttccttagaaagaaataaatgcttatgagcaaccatgaaaa 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtctccaggttgattgcttttccttagaaagaaataaatgcttatgagcaaccatgaaaa 619
Query: 421 actgtataatatgtaatcaaacattcctagagattatatgtctagatctttttaaaaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actgtataatatgtaatcaaacattcctagagattatatgtctagatctttttaaaaggt 679
Query: 481 tagacaacaatactgatagaatactgcactattcatcttgctgggtttaggaagaggttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagacaacaatactgatagaatactgcactattcatcttgctgggtttaggaagaggttt 739
Query: 541 tttttttt----atcctaatagattaagaggtgatgaaatctcattttatgttatatcct 596
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttttttttttttatcctaatagattaagaggtgatgaaatctcattttatgttatatcct 799
Query: 597 accttggaattgattaaagcttttctaagtt 627
|||||||||||||||||||||||||||||||
Sbjct: 800 accttggaattgattaaagcttttctaagtt 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1030
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1020
Effective search space: 629340
Effective search space used: 629340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
