TTTGGGCCGCTATACGACTCCTATCCGGAGAGGATCCGCGGAATTCTGCC
TATGCCACTTAAGTCCATTAGAAGGCACCACTACCAGACCAAAGCCAAGG
ACTCCACATGATTCCTTCCCAGGACACAAGCTTTGGAGATCAGGCGACCC
CCCTGCCCCCACCCCGTACCTCACATACCGAAGGCCAGAGGTAAGCGACT
CCACTTGAGATCATCTGTGCGGCTACGTCTTCCGTAAGAATCCACGAACA
CCCCAAATTCTGTAAGGCGCCAAGGGCATGGGGACATTAGCCACGTGTGC
TTTGATGGGAGAACAAGGACCAAAGCCCATGGGCAACTGACTGGCTCTAA
CCGGACTGGCAAAGCCAGACGACCACCACAGAACCATCTTCAGTTTAAAT
TGAAAGTTTCCTAAGTGAAGTTTTCTGAGTAATCCGTTTTCCTCAAGAAA
GAAAGTTGACNAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAACA
AAAAAAAAAAGCCGGGCGCGGTGGCGCACGCCTTTAACCCCAGCACTCGG
GAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGATCTACAGA
GTGAGTTCCAGGACAGCGAGGGCTATACAGAGAAACCCTGTCTCGAAAAC
CAAAAAAAGAAAAAAAAAGTGGGAGAGGAAAAAAGGGAGGAATAGACAGA
CTGAAACGCTAAGACAGGCAGGAAGGGGAAAAAGAAACGCCCAGAGAN

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCTCCCTCCCCTTTCTCTATCTCCCTCTTGCTCT
GCGCCCCCTCCCTACACACCCTCCCCCCACCCCACCCCACCCCATTGCTC
TGGCTCCCGCTCACTCCGGGCCCTGCTCACTCTGGACACTGGTCAAAGGA
ATTCTTAAAAAGAAAAGATTATGTTAGTTGGACATGGTTGCTCACACCTT
TAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGACCTCTGAATTTGAGGC
TATCCTTGTCTACAGAACAAGTTCCAGGACAGCCAGGGCAACACAGAGAA
ACCTCACCTTGAAAGCAAGCAAGAAAAAACCCAAAAAGATAGATAGATAA
AAATAATTATCTTTATTTTTTGTTTATTTAACTTTAAAACTAGATGTAGT
CATTTTACATGTGTTTTTGCCTGTGTACATGTTATGTGCACCTCGTGCAC
CTCGTGCGTACTTGGTGTCCACGGAGGTCAGAAGAGGGCATCAGATCCCC
TAGTGGTGCTGAGACTTGAACCTGGTTCTTCTTCAAGAGCAACCAGTATT
ATTAACTGCTGATCCATTCTTACACGCGTTCTCGTGACCGGCCAGGAAAG
ACACAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTT
TCCGAGCCCGAGAGCAAGAGAGCAAGAACTCTATTGCTTACATCTTTAGG
AGCCAAA

Query= MSMg01no519_l18.b1 MSMg01no519_l18.b1 CHROMAT_FILE:
MSMg01no519_l18.b1 PHD_FILE: MSMg01no519_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:32 2005
         (648 letters)



>mm_chr5_116444973_116446020
          Length = 1048

 Score = 1143 bits (591), Expect = 0.0
 Identities = 614/627 (97%), Gaps = 11/627 (1%)
 Strand = Plus / Minus

                                                                       
Query: 29  gaattctgcctatgccacttaagtccattagaaggcaccactaccagaccaaagccaagg 88
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaattctgcccatgccacttaagtccattagaaggcaccactaccagaccaaagccaagg 589

                                                                       
Query: 89  actccacatgattccttcccaggacacaagctttggagatcaggcgacccccctgccccc 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 actccacatgattccttcccaggacacaagctttggagatcaggcgacccccctgccccc 529

                                                                       
Query: 149 accccgtacctcacataccgaaggccagaggtaagcgactccacttgagatcatctgtgc 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 accccgtacctcacataccgaaggccagaggtaagcgactccacttgagatcatctgtgc 469

                                                                       
Query: 209 ggctacgtcttccgtaagaatccacgaacaccccaaattctgtaaggcgccaagggcatg 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggctacgtcttccgtaagaatccacgaacaccccaaattctgtaaggcgccaagggcatg 409

                                                                       
Query: 269 gggacattagccacgtgtgctttgatgggagaacaaggaccaaagcccatgggcaactga 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gggacattagccacgtgtgctttgatgggagaacaaggaccaaagcccatgggcaactga 349

                                                                       
Query: 329 ctggctctaaccggactggcaaagccagacgaccaccacagaaccatcttcagtttaaat 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctggctctaaccggactggcaaagccagacgaccaccacagaaccatcttcagtttaaat 289

                                                                       
Query: 389 tgaaagtttcctaagtgaagttttctgagtaatccgttttcctcaagaaagaaagttgac 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgaaagtttcctaagtgaagttttctgagtaatccgttttcctcaagaaagaaagttgac 229

                                                                       
Query: 449 naaaaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaacaaa------aaaaaaaagccg 502
               ||||||||||||||||||||||||||||||||||||||      ||||||||||||
Sbjct: 228 ----aaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaacaaacaaaaaaaaaaaaagccg 173

                                                                       
Query: 503 ggcgcggtggcgcacgcctttaaccccagcactcgggaggcagaggcaggcggatttctg 562
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ggcgcggtggcacacgcctttaaccccagcactcgggaggcagaggcaggcggatttctg 113

                                                                       
Query: 563 agtttgaggccagcctgatctacagagtgagttccaggacagcgagggctatacagagaa 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 agtttgaggccagcctgatctacagagtgagttccaggacagcgagggctatacagagaa 53

                                      
Query: 623 accctgtctcgaaaa-ccaaaaaaaga 648
           ||||||||||||||| |||||||||||
Sbjct: 52  accctgtctcgaaaaaccaaaaaaaga 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)