| Query= MSMg01no519_n13.g1 MSMg01no519_n13.g1 CHROMAT_FILE:
MSMg01no519_n13.g1 PHD_FILE: MSMg01no519_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:41 2005
(577 letters)
>mm_chr5_14054968_14055944
Length = 977
Score = 901 bits (466), Expect = 0.0
Identities = 490/506 (96%), Gaps = 15/506 (2%)
Strand = Plus / Minus
Query: 1 cctggatatggagttataaaagtcttgtgagtctcctaatgctgatggtaggattcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cctggatatggagttataaaagtcttgtgagtctcctaatgctgatggtaggattcaaat 433
Query: 61 cggttttcacaatagaaatatgtgttcttaactgctgagcaattaaccaatcccagcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cggttttcacaatagaaatatgtgttcttaactgctgagcaattaaccaatcccagcaat 373
Query: 121 tatctcgataagcctttagatacaaacaggagtggcagaaagagctaaatggagtaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tatctcgataagcctttagatacaaacaggagtggcagaaagagctaaatggagtaaatt 313
Query: 181 aaaaacttcaatggttcatccttattattatctttatgtagaaaattccaaatctataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaaaacttcaatggttcatccttattattatctttatgtagaaaattccaaatctataat 253
Query: 241 ttttagtctgctactttaatatgcaatgaaatta-aaattggtttattcattcgtgtgtg 299
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 252 ttttagtctgctactttaatatgcaatgaaa-tataaattggtttattcattcgtgtgtg 194
Query: 300 tgtgtgtgtgtgtgtgtgtgtgtgtgtngtgtgtgtttgactaatgcctttaattctagt 359
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 193 tgtgtgtgtgtgtgt-------------gtgtgtgtttgactaatgcctttaattctagt 147
Query: 360 acttcagaggcagagcctgagggaactctgtgagttcaaggctagcctggtctatattgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 acttcagaggcagagcctgagggaactctgtgagttcaaggctagcctggtctatattgt 87
Query: 420 gagttccaggccagataggaatacacagtaagatcctgttttaaagaaaacacataaacc 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gaattccaggccagataggaatacacagtaagatcctgttttaaagaaaacacataaacc 27
Query: 480 agaaacagaagtttgtcagtgatcaa 505
||||||||||||||||||||||||||
Sbjct: 26 agaaacagaagtttgtcagtgatcaa 1
Score = 76.1 bits (39), Expect = 7e-18
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 293 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtngtgtgtgt 335
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgt 538
Score = 76.1 bits (39), Expect = 7e-18
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 293 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtngtgtgtgt 335
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 581 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgt 540
Score = 76.1 bits (39), Expect = 7e-18
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 293 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtngtgtgtgt 335
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 583 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgt 542
Score = 76.1 bits (39), Expect = 7e-18
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 293 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtngtgtgtgt 335
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 585 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgt 544
Score = 76.1 bits (39), Expect = 7e-18
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 293 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtngtgtgtgt 335
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 587 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgt 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 11
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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