BAC Information

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BAC

Clone NameMSMg01-521C10
Chromosome5 (Build37)
Map Location 88,374,407 - 88,374,993
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3
Downstream geneBC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521C10.T7 (MSMg01no521_c10.b1)MSMg01-521C10.TJ (MSMg01no521_c10.g1)
ACCAG592013AG592014
length730729
length of high quality
(start - end)
588 (79 - 666)320 (81 - 400)
definitionCHROMAT_FILE: MSMg01no521_c10.b1 PHD_FILE: MSMg01no521_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:24 2005CHROMAT_FILE: MSMg01no521_c10.g1 PHD_FILE: MSMg01no521_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTCTATAATTTGCGTCTCTATACGACTCTTATTTCCATAGAATCC
GCGGAATTCATAAAAAAGATCATTCACAACTGATTCCTAAGGAAGTTACT
TTTGATTACATTGGAGGGTGGTCAAAATATTCCCATTGACATTCACAGAC
CCAAGTATCTTGTTACAATACTCACTGCCACTCTGTTCACTCTGTCCTGT
GCACATCATTTAAACATTGTGTACTCAGTTCATAGCACAATAGTAATAAT
TAACTGAAAAGTTCCATCTATAACAACTAAACTGCACCAATCCTATCTGA
CTTTAAAAACAAATTCAAGTTAATTTCTCGAAATCTTAAAATTTGCTTAA
TTGCTTAATAACTTAATTAATTCTTAAAATCTTATTTATCCAAAAATGGC
AATAGCCAAATAATAGATATCAATTTACATTAATGATAAATATATATGAC
ATGATGACTGTGCAAGAGCTTTATTGGGCAAAGCTTTTGGGGGGGGATCA
AACAACCCAGTCACAAGGGTCACCTAAGACTATTGGAAAACACAGATCTT
TATGCTACAATTCATAACAGTTGCAAAGTTATAGTTGTGAAATGACAACA
AAAATAATTTTATGTTTGGGAGTCACCACAACATGAAGGACTGTATTAAA
GAGTTGCAACATTGGGAATATTGAGAACCACTGCTTTAAAATTTAGAGAG
AGGCAGTGGTCATATCCAACTGTATCAGAC
TTTTTTCCATGCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGAGGAAACCTCATCTCT
CTGCTTCTCATCCTCAGATTTGTACTTCTCAGCTTCTTGGTCCACACACT
CAATAGCCTCCTTGCTCAAGAGGCTCTTGTCTTTAGTGATTGTGATCTTG
ATCTCCTTCCCTGTGCTTTTATTTCCAACACAAACATTGAGGATGCCGTT
AGATCAATGTCAAAAGTAAATTCAAACTGAGCAACCCCTCAGGGTGCTGA
AGGTATGTCTGTGTGCATCAACTTTCCAAGCAGGTTGTTGTCCTTGGTTA
TGAAGTCCCTTTCACCTTCATACATCTGAATGATTACACCTGGCTGGTTG
TCATAGTAGGTGGTAAAGTCTGCGTCTCCTTAGTGTGGATGGTGATATTG
TGCTTGATTGTGACAGTCTTGACTCCACTAGCAGTTTCAATACCCTGGGA
AAGAGGAGTGACATCTAATATCAGCAAATCCTGAACATTTCTCAGACTTG
TCTTCACTTAGAATGGCTTCCTGGATAGCTGCTCCATAAGCAACAGCTGC
ATTGGGGTTAATTTTCATGTTCAGTTAGCTTTCATTGAGGATATCTTGCC
TAATTCTCCGAAAGTTTGGGATTTCTGGTAAAAAAATAACAACTCCCTAT
GTCAATATCACTGTATATTGCGAATTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_c10.b1 MSMg01no521_c10.b1 CHROMAT_FILE:
MSMg01no521_c10.b1 PHD_FILE: MSMg01no521_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:24 2005
         (588 letters)



>mm_chr5_88374207_88375194
          Length = 988

 Score = 1091 bits (564), Expect = 0.0
 Identities = 582/588 (98%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgattcctaaggaagttacttttgattacattggagggtggtcaaaatattcccattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgattcctaaggaagttacttttgattacattggagggtggtcaaaatattcccattg 260

                                                                       
Query: 61  acattcacagacccaagtatcttgttacaatactcactgccactctgttcactctgtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 acattcacagacccaagtatcttgttacaatactcactgccactctgctcactctgtcct 320

                                                                       
Query: 121 gtgcacatcatttaaacattgtgtactcagttcatagcacaatagtaataattaactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcacatcatttaaacattgtgtactcagttcatagcacaatagtaataattaactgaa 380

                                                                       
Query: 181 aagttccatctataacaactaaactgcaccaatcctatctgactttaaaaacaaattcaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aagttccatctataacaactaaactgcaccaatcctatctgactttgaaaacaaattcaa 440

                                                                       
Query: 241 gttaatttctcgaaatcttaaaatttgcttaattgcttaataacttaattaattcttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaatttctcgaaatcttaaaatttgcttaattgcttaataacttaattaattcttaaa 500

                                                                       
Query: 301 atcttatttatccaaaaatggcaatagccaaataatagatatcaatttacattaatgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttatttatccaaaaatggcaatagccaaataatagatatcaatttacattaatgata 560

                                                                       
Query: 361 aatatatatgacatgatgactgtgcaagagctttattgggcaaagcttttggggggggat 420
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 561 aatatatatgacatgatgactgcgcaagagctttattgggtaaagcttttggggggg-at 619

                                                                       
Query: 421 caaacaacccagtcacaagggtcacctaagactattggaaaacacagatctttatgctac 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaacaacccagtcataagggtcacctaagactattggaaaacacagatctttatgctac 679

                                                                       
Query: 481 aattcataacagttgcaaagttatagttgtgaaatgacaacaaaaataattttatgtttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aattcataacagttgcaaagttatagttgtgaaatgacaacaaaaataattttatgtttg 739

                                                           
Query: 541 ggagtcaccacaacatgaaggactgtattaaagagttgcaacattggg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggagtcaccacaacatgaaggactgtattaaagagttgcaacattggg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)