BAC Information

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BAC

Clone NameMSMg01-521D11
Chromosome5 (Build37)
Map Location 71,024,473 - 71,186,481
singlet/doubletdoublet
Overlap geneGabrg1
Upstream genenone
Downstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4, Gabrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521D11.T7 (MSMg01no521_d11.b1)MSMg01-521D11.TJ (MSMg01no521_d11.g1)
ACCAG592063AG592064
length751743
length of high quality
(start - end)		671 (63 - 733)476 (114 - 589)
definitionCHROMAT_FILE: MSMg01no521_d11.b1 PHD_FILE: MSMg01no521_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:29 2005CHROMAT_FILE: MSMg01no521_d11.g1 PHD_FILE: MSMg01no521_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,185,811 - 71,186,481)(71,024,473 - 71,024,948)
sequence
NCCCAAAAATTTGCGCCGCTATACAACTCCTATTTCGAGAGGATCCGCGG
AATTCACATTGTCTCTTTAAATTAGCCATCCTAGATTAAATAATCACTTT
GAAAACAGCAAAAGTTAGAAGTCCAGGCCTTTCCATTACTCTATGAGAGC
AAGATTGCTATATACTCACTAACAAAATATTCATCAAATTTAAATATATA
CATATATTATTTATGTAAAAATAGAAATATATGTTATTTATATATAAAAA
TATAGTCTAACCCTAAAGGCCTAGATCTAACCCAGAAAAAAAAATCTGTT
AAACATTTTATTGAATATAAAGTTGTAATTTTGGTGAACAAAATTTTAGT
GAACAATTTTTAGATATCTGTAATATTTTAGATTTTACACATGAAATATT
AATTCTGATTTATATTCATATAACTGATTTCAAATTAAAATTATTTTCAG
ACTTTGTAACAGGTTTTTGTTGCTACATTTCATAACGAGTATATTACTAT
TGAAATAAATAAATAATATGATGCAAAACTAAGTTTAGGGTTTCTTTCAA
TCCTTGATATCATTAACCATTCATTCTGTGCTGCTTTGCAGTGAGACCCA
CAGTGATTGAAACAGATGTTTATGTAAACAGCATTGGACCTGTGGATCCC
ATAAACATGGTAAGAGCTGTGACAATACAGGGTTCATGAATGTATGCGTC
ACAGCAGAATGAGGAAATGTGTGAATTAACATGGTTGACTGTTGAATAAT
T

NACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACGAATAGACTTAACTCCATTGC
ACTAGACTCACTGCACTAACTCCCAACTAACTGATTCTTCCTATACAGCT
CTTCAGCACCTTCTCTTTCCTGTTCTGTTCTCATGAGAGTTGGGCTGATC
CTATCTCTACCTCATTCTGTCAAATGCTTCTCTGATTTGTCACTTTGTCT
GCCCCTCAATTAGACTTTCAAACATGACTTCTTCCTTCTATAAACTAATT
TCACCTTCAATGTGTGTACTAAAATAATGTCTATAATCCAGCCAGAGGAA
TTAAATGTTTATAGCATGTCTGCATGCCAGGCAATCACACAGACCTAGAA
AGTATTTGGGCATGATACTTTGCCAGGGCAGCCATGTTGCTAGATTTAAA
TTCCTCTATCACTATAGAATAATTTAAAATATGTGTGTTTCTTTTACCAA
CAAAAATGGTAAATAAAATGATCATTATGCCTCTTCTACTTTGTAAATTT
GGGACTACATATTTCTATTATAAAAACTTTGTTACCACTTCAAAGTTGGA
GTTTACTTTATTGAAAAGATCATTAGGTCTGCAAATTAGTTTTGATTAGT
CTGATAATAAGCACTATTAAAAAGGGAAAGATAAGCTTTTACTAGTATAC
AACTTTGGAAGCAGAAGTTAAAACCTGCCCTTTATTATGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_d11.b1 MSMg01no521_d11.b1 CHROMAT_FILE:
MSMg01no521_d11.b1 PHD_FILE: MSMg01no521_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:29 2005
         (671 letters)



>mm_chr5_71185419_71186489
          Length = 1071

 Score = 1274 bits (659), Expect = 0.0
 Identities = 668/671 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctctttaaattagccatcctagattaaataatcactttgaaaacagcaaaagttagaagt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 ctctttaaattagccatcctagattaaataatcactttgaaaacagcaaaagttagaagt 1004

                                                                        
Query: 61   ccaggcctttccattactctatgagagcaagattgctatatactcactaacaaaatattc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 ccaggcctttccattactctatgagagcaagattgctatatactcactaacaaaatattc 944

                                                                        
Query: 121  atcaaatttaaatatatacatatattatttatgtaaaaatagaaatatatgttatttata 180
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  attaaatttaaatatatacatatattatttatgtaaaaatagaaatatatgttatttata 884

                                                                        
Query: 181  tataaaaatatagtctaaccctaaaggcctagatctaacccagaaaaaaaaatctgttaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  tataaaaatatagtctaaccctaaaggcctagatctaacccagaaaaaaaaatctgttaa 824

                                                                        
Query: 241  acattttattgaatataaagttgtaattttggtgaacaaaattttagtgaacaattttta 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  acattttattgaatataaagttgtaattttggtgaacaaaattttagtgaacaattttta 764

                                                                        
Query: 301  gatatctgtaatattttagattttacacatgaaatattaattctgatttatattcatata 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  gatatctgtaatattttagattttacacatgaaatattaattctgatttatattcatata 704

                                                                        
Query: 361  actgatttcaaattaaaattattttcagactttgtaacaggtttttgttgctacatttca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  actgatttcaaattaaaattattttcagactttgtaacaggtttttgttgctacatttca 644

                                                                        
Query: 421  taacgagtatattactattgaaataaataaataatatgatgcaaaactaagtttagggtt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  taacgagtatattactattgaaataaataaataatatgatgcaaaactaagtttagggtt 584

                                                                        
Query: 481  tctttcaatccttgatatcattaaccattcattctgtgctgctttgcagtgagacccaca 540
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 583  tctttcaatccttgatatcattaaccattcattctgtgctactttgcagtgagacccaca 524

                                                                        
Query: 541  gtgattgaaacagatgtttatgtaaacagcattggacctgtggatcccataaacatggta 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523  gtgattgaaacagatgtttatgtaaacagcattggacctgtggatcccataaacatggta 464

                                                                        
Query: 601  agagctgtgacaatacagggttcatgaatgtatgcgtcacagcagaatgaggaaatgtgt 660
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 463  agagctgtgacaatacagggttcatgaatgtatgcttcacagcagaatgaggaaatgtgt 404

                       
Query: 661  gaattaacatg 671
            |||||||||||
Sbjct: 403  gaattaacatg 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_d11.g1 MSMg01no521_d11.g1 CHROMAT_FILE:
MSMg01no521_d11.g1 PHD_FILE: MSMg01no521_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:29 2005
         (476 letters)



>mm_chr5_71024273_71025148
          Length = 876

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactaactcccaactaactgattcttcctatacagctcttcagcaccttctctttcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 cactaactcccaactaactgattcttcctatacagctcttcagtaccttctctttcctgt 260

                                                                       
Query: 61  tctgttctcatgagagttgggctgatcctatctctacctcattctgtcaaatgcttctct 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tctgttctcatgagagttgggctgatcctatctctgcctcattctgtcaaatgcttctct 320

                                                                       
Query: 121 gatttgtcactttgtctgcccctcaattagactttcaaacatgacttcttccttctataa 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttttcactttgtctgcccctcaattagactttcaaacatgacttcttccttctataa 380

                                                                       
Query: 181 actaatttcaccttcaatgtgtgtactaaaataatgtctataatccagccagaggaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaatttcaccttcaatgtgtgtactaaaataatgtctataatccagccagaggaatta 440

                                                                       
Query: 241 aatgtttatagcatgtctgcatgccaggcaatcacacagacctagaaagtatttgggcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtttatagcatgtctgcatgccaggcaatcacacagacctagaaagtatttgggcat 500

                                                                       
Query: 301 gatactttgccagggcagccatgttgctagatttaaattcctctatcactatagaataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatactttgccagggcagccatgttgctagatttaaattcctctatcactatagaataat 560

                                                                       
Query: 361 ttaaaatatgtgtgtttcttttaccaacaaaaatggtaaataaaatgatcattatgcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaaatatgtgtgtttcttttaccaacaaaaatggtaaataaaatgatcattatgcctc 620

                                                                   
Query: 421 ttctactttgtaaatttgggactacatatttctattataaaaactttgttaccact 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctactttgtaaatttgggactacatatttctattataaaaactttgttaccact 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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