BAC Information

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BAC

Clone NameMSMg01-521E08
Chromosome5 (Build37)
Map Location 42,641,034 - 42,641,535
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521E08.T7 (MSMg01no521_e08.b1)MSMg01-521E08.TJ (MSMg01no521_e08.g1)
ACCAG592105AG592106
length749738
length of high quality
(start - end)		630 (52 - 681)621 (82 - 702)
definitionCHROMAT_FILE: MSMg01no521_e08.b1 PHD_FILE: MSMg01no521_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:33 2005CHROMAT_FILE: MSMg01no521_e08.g1 PHD_FILE: MSMg01no521_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTATAAAATGTATTTAGAAGTGTATGGGAACTGGGGTA
GTGGGGGATTCTCCAAATGGTTTTAATTTTCAGACACTAAAAACAACTAC
ACAGAGGGCACATTTTCTAAGGAATCCATGTTGGATTTCATTGTTTTTGG
TTTTGTTTGTTTGTTTTTTTATGTTCCTGAAGTCCTAAATAAGGTGAGCC
AAAAATTCTGTGTTCAAACTAAACCAGGAGAGTGTATAACAAGCCACTGA
TACCCACTTACACTTGGTAACCAGTTTACAAAATAAATTTTTAATGCCCT
ATGTCAGTGGTTGTCAACCTGTTGAATCACAACCTTTTCAGGGGTCAAAT
AACCCTTTACAGGGCTTTCCTAAAACTATCATAAAACATGTATGTATACC
ACTATGCCTAACAATAATAAAATTACAGTTATGAAGTAACAATGAAATCA
TTTATGATTGGTGATCACAAGAACATAAGAACCGTATTAAAGGGTTGAAT
ATTAGGAAGAGTGAGAACCACTACCCTGTATGGTTCCATCCCACATCTTA
GTGTTAGTTCTCCCATTCTACCTCCTCCTCTTCTTCTCCCTACCTCTTCT
TCTCTCTCCGATTCTCTATTTCCATATCCACCAGCTAACCTCAATATGCC
AGACTAAATATGCTAATAACAGAGAATGTGTGTTTATGCCTTGATCTCC

TTATTTCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTT
TATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACG
AGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACA
TTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACC
TACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAG
CGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGT
CTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGT
AATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTT
TATGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGA
TAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAG
ACTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGAT
GGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAAT
TTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTA
GAAGGATCTGATGGCGTTTTGGATTTCTTCAAGATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_e08.b1 MSMg01no521_e08.b1 CHROMAT_FILE:
MSMg01no521_e08.b1 PHD_FILE: MSMg01no521_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:33 2005
         (630 letters)



>mm_chr5_42641034_42642062
          Length = 1029

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%), Gaps = 1/503 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttataaaatgtatttagaagtgtatgggaactggggtagtgggggattctcca 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 502 gaattccttataaaatgtatttagaagtgtatgggaactggggtagggggggattctcca 443

                                                                       
Query: 65  aatggttttaattttcagacactaaaaacaactacacagagggcacattttctaaggaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatggttttaattttcagacactaaaaacaactacacagagggcacattttctaaggaat 383

                                                                       
Query: 125 ccatgttggatttcattgtttttggttttgtttgtttgtttttttatgttcctgaagtcc 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 ccatgttggatttcattgtttttggttttgtttgtttg-ttttttatgttcctgaagtcc 324

                                                                       
Query: 185 taaataaggtgagccaaaaattctgtgttcaaactaaaccaggagagtgtataacaagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaataaggtgagccaaaaattctgtgttcaaactaaaccaggagagtgtataacaagcc 264

                                                                       
Query: 245 actgatacccacttacacttggtaaccagtttacaaaataaatttttaatgccctatgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actgatacccacttacacttggtaaccagtttacaaaataaatttttaatgccctatgtc 204

                                                                       
Query: 305 agtggttgtcaacctgttgaatcacaaccttttcaggggtcaaataaccctttacagggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agtggttgtcaacctgttgaatcacaaccttttcaggggtcaaataaccctttacagggc 144

                                                                       
Query: 365 tttcctaaaactatcataaaacatgtatgtataccactatgcctaacaataataaaatta 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 143 tttcctaaaactatcataaaacatgtatgtataccactatgcctaacaataacaaaatta 84

                                                                       
Query: 425 cagttatgaagtaacaatgaaatcatttatgattggtgatcacaagaacataagaaccgt 484
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 83  cagttatgaagtaacaatgaaataatttgtgattggtgatcacaagaacataagaaccgt 24

                                  
Query: 485 attaaagggttgaatattaggaa 507
           |||||||||||||||||||||||
Sbjct: 23  attaaagggttgaatattaggaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space:   631780
Effective search space used:   631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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