Query= MSMg01no521_f04.b1 MSMg01no521_f04.b1 CHROMAT_FILE:
MSMg01no521_f04.b1 PHD_FILE: MSMg01no521_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:37 2005
(634 letters)
>mm_chr5_19525684_19526717
Length = 1034
Score = 1164 bits (602), Expect = 0.0
Identities = 622/630 (98%), Gaps = 3/630 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagatgataagaatagggcatctcagtcttagagtatttgtctcatgaggcag 64
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcacaggtgataa---tagggcatctcagtcttagagtatttgtctcatgaggcag 264
Query: 65 ttgggtgtgtccacaagtctagtacagtgtagaaacaccatgatgtcgatatgcagataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgggtgtgtccacaagtctagtacagtgtagaaacaccatgatgtcgatatgcagataa 324
Query: 125 aagtcaatacctggcttttcctggtagaggagaaagagaaaagaagacaaaggtccaagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtcaatacctggcttttcctggtagaggagaaagagaaaagaagacaaaggtccaagc 384
Query: 185 ctgatatagctgtctcgtatgaggctatgccagtgtctggcaaatacagaagtggatgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgatatagctgtctcgtatgaggctatgccagtgtctggcaaatacagaagtggatgtt 444
Query: 245 cacagtcatctataggatggaacacagggcccccaatggagaagctagagaaagcaccca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacagtcatctataggatggaacacagggcccccaatggagaagctagagaaagcaccca 504
Query: 305 aggagctgaaggggtctgcaacccaataggtggaacaacaatatgaactaaccagtaccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggagctgaaggggtctgcaacccaataggtggaacaacaatatgaactaaccagtaccc 564
Query: 365 ccagagctcgtatctctagctgcatatggagcagaagatggcctagtcggccatcattgg 424
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 ccagagctcgtatctctagctgcatatgtagcagaagatggcctagtcggccatcattgg 624
Query: 425 gaagagaggccccttggtcttgcaaactttatatgccccagttcaggggaagaagccagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaagagaggccccttggtcttgcaaactttatatgccccagttcaggggaagaagccagg 684
Query: 485 gccaagaaatgagagtgagtgggtaggggagcagcagggcaggggggagggtatagggaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccaagaaatgagagtgagtgggtaggggagcagcagggcaggggggagggtatagggaa 744
Query: 545 ctttcgatatagcatttgaaaggtaaataaagaaaatatctaataaaaaataatccaaaa 604
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 ctttcggtatagcatttgaaaggtaaataaagaaaatatctaataaaaaataatcaaaaa 804
Query: 605 aagaaaaaagaaaaatagaagaagaagaca 634
||||||||||||||||||||||||||||||
Sbjct: 805 aagaaaaaagaaaaatagaagaagaagaca 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_f04.g1 MSMg01no521_f04.g1 CHROMAT_FILE:
MSMg01no521_f04.g1 PHD_FILE: MSMg01no521_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:37 2005
(668 letters)
>mm_chr5_19714257_19715325
Length = 1069
Score = 1208 bits (625), Expect = 0.0
Identities = 658/669 (98%), Gaps = 2/669 (0%)
Strand = Plus / Minus
Query: 1 tcacctgaggaataccgaatggctgagaagcacctgaaaaaatgttcagcatcagtgatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct: 927 tcacctgaggaataccgaatggctgagaagcacctgaaaaaatgttcaacaccagtga-t 869
Query: 61 ttttttttaatggcgatgtttgctgttgaggtgaacagacttcatttagcataggtgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ttttttttaatggcgatgtttgctgttgaggtgaacagacttcatttagcataggtgtct 809
Query: 121 ttgactattccttgtgacattttcatgtcacattgacatcctgaaaactggagtgagagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ttgactattccttgtgacattttcatgtcacattgacatcctgaaaactggagtgagagt 749
Query: 181 gcttttccatgagcaatagaaagaatatttcaacaaagaaggaatgacctctctttaaag 240
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtttttccatgagtaatagaaagaatatttcaacaaagaaggaatgacctctctttaaag 689
Query: 241 agtagtaatactcttaaaaaacccttaggaaaccagcactgttaaatttcccaaatttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agtagtaatactcttaaaaaacccttaggaaaccagcactgttaaatttcccaaatttct 629
Query: 301 ttagaagcatcaatgcataaagtagacatttactaataaagctaactccttccacctcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttagaagcatcaatgcataaagtagacatttactaataaagctaactccttccacctcag 569
Query: 361 attaaacataggaaatatgacttca-tttttttccataagatactccagaagatttcaaa 419
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 568 attaaacataggaaatatgacttcattttttttccataagataatccagaagatttcaaa 509
Query: 420 gatctgaatggagaataaagacaagagtcatttagttgggagtgaaatgtatgctattta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gatctgaatggagaataaagacaagagtcatttagttgggagtgaaatgtatgctattta 449
Query: 480 tttttgtattcagtataaattttataggtctagttcattccaaggcaataaaattataca 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttttgtattcagtataaatattataggtctagttcattccaaggcaataaaattataca 389
Query: 540 aatatacttagcagacagtcatttatgtaaatggttttttatctactagtatattggtat 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 aatatacttagcagacagtcatttatgtaaatggtttttgatctactagtatattggtat 329
Query: 600 aaccaaaacttagtccaaatttaatggttcttgataatcttatctagactcattagagaa 659
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaccaaaatttagtccaaattcaatggttcttgataatcttatctagactcattagagaa 269
Query: 660 taactagaa 668
|||||||||
Sbjct: 268 taactagaa 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space: 696822
Effective search space used: 696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
