Query= MSMg01no521_f09.b1 MSMg01no521_f09.b1 CHROMAT_FILE:
MSMg01no521_f09.b1 PHD_FILE: MSMg01no521_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:38 2005
(579 letters)
>mm_chr5_50396809_50397788
Length = 980
Score = 961 bits (497), Expect = 0.0
Identities = 527/537 (98%), Gaps = 5/537 (0%)
Strand = Plus / Minus
Query: 1 gaattctctagtttac-cgggtttttttg-ttgtttgtttgttt-ttgttttgttttctg 57
|||||||||||||||| ||| ||||||| |||||||||||||| || ||||||||||||
Sbjct: 535 gaattctctagtttacaaggg-ttttttgtttgtttgtttgtttgtt-ttttgttttctg 478
Query: 58 gaagcatatttccatttagtgtcttccagtgttagagtagattctaaaattttaaccctt 117
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaagcatatttccacttagtgtcttccagtgttagagtagattctaaaattttaaccctt 418
Query: 118 gctcttactctagactctgagtcatcttaggggagtcatgacgcctgactacttttattt 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gctcttactccagactctgagtcatcttaggggagtcatgacgcctgactacttttattt 358
Query: 178 tgaatatggttttaaaaaacatatttccacagtactaatgttgagttaaatcacatactt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgaatatggttttaaaaaacatatttccacagtactaatgttgagttaaatcacatactt 298
Query: 238 tattataaatgtacaaggaaggaaatactgatgatgcattgggggccaactctgaccctc 297
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 297 tattataaatgtacaaggaaggaaatactgatgaagcattgggggccaactctgacccac 238
Query: 298 agagagctaacatttctaagcagtcgcattacaaatggttatatatgcatttatataata 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agagagctaacatttctaagcagtcgcattacaaatggttatatatgcatttatataata 178
Query: 358 tcttccatgttgcttttttagcttcagaatctaaaatatttacagtctcaccatggaaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcttccatgttgcttttttagcttcagaatctaaaatatttacagtctcaccatggaaaa 118
Query: 418 tagtttatgactggattcttctgggttctgttgtattcctcttaggagaagtaagtttta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tagtttatgactggattcttctgggttctgttgtattcctcttaggagaagtaagtttta 58
Query: 478 tttgactgggcagttagcttggctaaccttctacttgtagctctgtgtctctggtag 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 tttgactgggcagttagcttggctaaccttctacttgtagctctgtgtctctggtag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_f09.g1 MSMg01no521_f09.g1 CHROMAT_FILE:
MSMg01no521_f09.g1 PHD_FILE: MSMg01no521_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:38 2005
(504 letters)
>mm_chr5_50287410_50288314
Length = 905
Score = 911 bits (471), Expect = 0.0
Identities = 497/511 (97%), Gaps = 10/511 (1%)
Strand = Plus / Plus
Query: 4 tgattctttctgtcttagtgctgc-aatagcaggtggagacggaaactgtagaaatcagg 62
|||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 195 tgattctttcagtcttagtgctgcaaatagcaggtggagacagaaactgtagaaatcagg 254
Query: 63 gtgctaaggtagggaaaggtggctgggaaaactcactgacttatggtgggagatgagaaa 122
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 255 gtgctaaggtagggaaaggtggctgggaaaactcactggcttatggtgggagatgagaaa 314
Query: 123 atacaggcagactccactctcaggatctggctactgtgatttagagcaaggcagaacata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atacaggcagactccactctcaggatctggctactgtgatttagagcaaggcagaacata 374
Query: 183 aaagaaaattataatattatccatataagtttagcaaatatattttagtatgcatacact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaagaaaattataatattatccatataagtttagcaaatatattttagtatgcatacact 434
Query: 243 accatgaacttggtgttttagcgacaatggctataattataaggtaaaacttaaatatcc 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 435 accatgaacttggtgttttagcgacaacggctataattataaggtaaaacttaaatatcc 494
Query: 303 tactttcagctaaaataactgaaaacttaaaatgatttaaaaactcacaaaactgttttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tactttcagctaaaataactgaaaacttaaaatgatttaaaaactcacaaaactgttttt 554
Query: 363 ttctagttggcagtacagaaccaaaagccaagta---------tatttggacccaagatg 413
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 555 ttctagttggcagtacagaaccaaaagccaagtaagtaagtaatatttggacccaagatg 614
Query: 414 tcacccaggctttaaaaacattctaaaggcatacaactggatccgacctcatttaaacac 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tcacccaggctttaaaaacattctaaaggcatacaactggatccgacctcatttaaacac 674
Query: 474 agcacatacttcaagactcaaatgcacttgt 504
|||||||||||||||||||||||||||||||
Sbjct: 675 agcacatacttcaagactcaaatgcacttgt 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space: 442130
Effective search space used: 442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
