BAC Information

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BAC

Clone NameMSMg01-521F23
Chromosome5 (Build37)
Map Location 8,060,774 - 8,061,303
singlet/doubletsinglet
Overlap geneSri
Upstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, LOC433840
Downstream geneAdam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521F23.T7 (MSMg01no521_f23.b1)MSMg01-521F23.TJ (MSMg01no521_f23.g1)
ACCAG592183AG592184
length7671,270
length of high quality
(start - end)		661 (46 - 706)---
definitionCHROMAT_FILE: MSMg01no521_f23.b1 PHD_FILE: MSMg01no521_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:41 2005CHROMAT_FILE: MSMg01no521_f23.g1 PHD_FILE: MSMg01no521_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACCTACTCTCTCCCCACTGACATCATTGTGGCTGGGCTTTGT
TTCTTCTTCAGCCTCGGTACCAACTCTGCAGGCTCACTCGTATCTAGCTT
GACCATGCTGGTTACCATCCCAGCCTCAGTACTTATCCCGGGGACCTTCA
GCAGGTGGAACTCTTTCTGCACACCCAGTGTGACTGGCCATCAAAATATG
GACTGGTTGGTTGAAGGGATGAATTCTCATCCCTGGATAAGAGCTGTAGT
TTAGTGTAGAAGTAACCCTCATTTGTAAAGGCTAAGGGGAAATGTAGATT
ATTACTTTTAATAAGACTATTTTGGGGGGCTGGTGAGATGGCTCAGTGGG
TAAGAGCACCCGACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAA
CCACGTGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCTG
GAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAAT
TAATTTTAAAAAAAGACTATTTTGGGGTTTTATTGATATTTAAAAGTTGT
ATATAGTTTCAAAATTATCCATGTGGTGTTTTCCCAGTACGCTGGTTCTC
TACACTCTACCACAATATCTCAGCCATCTTTTCTTCCAGAGAAACAATGA
TTCAGGCCTAGCAAGGAAGGATGCCCCTCCCTGGTTCCGTCAAGCTTCTT
GTCGAGGAACCACAAAA

AGCTGGTAAGTTGTATAANNATTTTTACGGGGNGGNNNNNTNNNNNNNGT
TTCCCTCCACCCCTCGNANNNGNGNNNNNGNNNNGNGANNGTGCAAANCC
CGACGCGAGAGGGGNGNNAGNAGNAGAGGNGAANAGAAGAGAGAGCGAAG
NAGATGGTTAGTTATTTATTTTGCTCCCACAGCACAAAGAGAGATATAGC
GAAAAGACCAAGACCTTGCGAGAGCCAACCAAAGATTCCATTCTGAGAGA
GAGGGAGGCAGCAGAGTTTATGCAGAGCCATAATAGATTCGCAGAAATAT
CCGCCATATATTATGTTGCGCTAACCGTCTACAATGCACAACGTAGTTCG
ACGGGCATCATGCACCTAGTGACACCGTTGTTTCCATATCTGCGCCGCGC
CTGNTTGTGAGAGCGAGCGCGCGCGGTACGGACATTAGTCGATATGGCCA
TTGAGAAGTTAGTCGATANCAACCAGTCACATAANATGTATTTTTTTTTT
TCACCGCCATATGTTCGCGCGTAACCTCTCCAGACGAACTCCCGAATATT
ATCACTAGCTTTTTCTCCAAATAGCCACATACCACATTATCGGCAACCAG
AACAAAGCACTTAGCCCACACAATACACGTTATTTATCGATACACACCCA
CCCACCACACCAATAACACAATACCGCACACCATCTCCCTATTATATCAA
CCTACCTCTCTTACTCCCTCCCCTTTATCCCCCACCCATATATTTACCTA
CCCCGCCACCGTTACCCCGCTATCCCGTCTTTCACTCTCCCACCTTATTA
CGTCGATATGTCTCATACCCCCGATTTTGCACCCCCACCCTTCCTTCTCC
CCTTTACTCTACCCACCCTATTATCCCCCACCGATATTATATTTCACGCC
TCTCATATTTATATGCGCCCGTTATATTCCAGCCGCCACACTATAATATC
CCCCTACTACTCACTATCTTCTAGACGCCTTTATCGAATACCACGGATCA
CTTTCTGCACATATATTTCTCGCACCGCTACACTTANACCATTTATTCAC
GCTATTCTCCTTCTCACGCCTCATCTTCTCAACTTTGTGCTGTTTCACCC
ACTTCCCCTCCCTCTCACCCGCTTTTCCCACGTTCCTNTCACCCTATATC
TCACCCTTCCACCACACGCGCATTATGTCACATATCCGTCGCCNACCACA
CTATATTCCACGGCGCACATATATCGCGTGTACGTATCGGTTGCTTCGCA
TCTATCCGACACACACGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_f23.b1 MSMg01no521_f23.b1 CHROMAT_FILE:
MSMg01no521_f23.b1 PHD_FILE: MSMg01no521_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:41 2005
         (661 letters)



>mm_chr5_8060774_8061834
          Length = 1061

 Score =  955 bits (494), Expect = 0.0
 Identities = 521/530 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtacctactctctccccactgacatcattgtggctgggctttgtttcttcttc 64
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 530 gaattctgtacctacactctccccactggcatcattgtggctgggctttgtttcttcttc 471

                                                                       
Query: 65  agcctcggtaccaactctgcaggctcactcgtatctagcttgaccatgctggttaccatc 124
           ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 470 agcctcggtaccaactctgcaagctcactcctatctagcgtgaccatgctggttaccatc 411

                                                                       
Query: 125 ccagcctcagtacttatcccggggaccttcagcaggtggaactctttctgcacacccagt 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccagcctcagtacttaacccggggaccttcagcaggtggaactctttctgcacacccagt 351

                                                                       
Query: 185 gtgactggccatcaaaatatggactggttggttgaagggatgaattctcatccctggata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtgactggccatcaaaatatggactggttggttgaagggatgaattctcatccctggata 291

                                                                       
Query: 245 agagctgtagtttagtgtagaagtaaccctcatttgtaaaggctaaggggaaatgtagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agagctgtagtttagtgtagaagtaaccctcatttgtaaaggctaaggggaaatgtagat 231

                                                                       
Query: 305 tattacttttaataagactattttggggggctggtgagatggctcagtgggtaagagcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tattacttttaataagactattttggggggctggtgagatggctcagtgggtaagagcac 171

                                                                       
Query: 365 ccgactgctcttccgaaggtctggagttcaaatcccagcaaccacgtggtggctcacaac 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 170 ccgactgctcttccgaaggtctggagttcaaatcccagcaaccacatggtggctcacaac 111

                                                                       
Query: 425 catccgtaacgagatctgactccctcttctggagtgtctgaagacagctacagtgtactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 catccgtaacgagatctgactccctcttctggagtgtctgaagacagctacagtgtactt 51

                                                             
Query: 485 acatataataaataaataaattaattttaaaaaaagactattttggggtt 534
           ||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 50  acatataataaataaataaataaatttttaaaaaagactattttggggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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