BAC Information

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BAC

Clone NameMSMg01-521G09
Chromosome5 (Build37)
Map Location 114,178,571 - 114,368,648
singlet/doubletdoublet
Overlap geneD5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c
Upstream geneMyo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707
Downstream geneSsh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521G09.T7 (MSMg01no521_g09.b1)MSMg01-521G09.TJ (MSMg01no521_g09.g1)
ACCAG592203AG592204
length751749
length of high quality
(start - end)
487 (51 - 537)451 (78 - 528)
definitionCHROMAT_FILE: MSMg01no521_g09.b1 PHD_FILE: MSMg01no521_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:43 2005CHROMAT_FILE: MSMg01no521_g09.g1 PHD_FILE: MSMg01no521_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,178,571 - 114,179,053)(114,368,198 - 114,368,648)
sequence
TTTTCTCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAATCTTTCCCTGAGTCAGTCCCTTGGTGCGGCAGGCTCT
TTCCTCTTGTAAGCCTTTGTGTGTGCCTCGAGAGGCCTTCTCCTTCCTCT
CAACCCTGCTTCCTCAACCCCTTTCCCCACTGTAAACACCAGTATAAAAT
GGCCCTTCGTCCAAGGCCTTCTACCCTGCCACCACCTTATCACTTTTGAT
TGTCTTGGTCCCTCCTTCGGCATCATCTCGTTCACTTATGGAATGTCAGC
CTTCCTAACTCACCAGTACATAGCGTGGATCTGTGCCACCCTCGTATGGT
ACAACCAGAAATGGAACAGAGAGACAGAGACTGAGTCAGTCTAGAGGGGA
CGCTGTGGGTTGGGATGGAGGAGTACAGTGCCATGGTACAGTTCTTGCAC
AGTGTGCATGGCATCCCATGGACAATCCCCTGCACTGCATAAACTGGGCA
TGGTGGTATCCATCTCCAACCCAGCGCTCCAGAGGTGGGAGTATAAGGAT
CAGAAGCTCAAAGTCATGCTCAGCTACACAGAATGAGTTTATAAAAGCAG
AAATCCCTTTGTTTTTGTTTTGTTTTTTCCTTCCCAGCCCCTGCTCCTGG
AATGTCGATTCTGAGACTAACTCGTTATTATTAAATGTCTCTTTCAGGCT
GGTGAGGTGGCTCATTAAGTAATACCACTGACTGCTCTTCTGTTAGCCCT
G
NAACAATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGAGTAGAGTAAGCAAAAAC
ATCTGGCTTCATTGGTGACCTCGCCGCAGGAATACGCAGTACAAAAAGGA
AATAGGGGCTTCCTTTTCTCTGCCCCTCATATTAGACATATCAGGGCCTT
GATTCGTTATTATTAGGTTCTAAGAATTATCTACTCAGCATCCAAGACAT
CAGAGGATTTGGAAAAACTTAAAGGAGTGGGAGTTTCCTTGGTATTTGAC
ATGACCTTGTTTACCTAAGCGGCAGATGGCATAAGGAAGCCACAGACATT
TCAGTTGGACCCGGGTTCAAATTCCAGTCACACTTCCTACAAGCTGTGTG
ACCCTGGACAGGTTTTTGGACCTCTCTGAGCCTTACTTAGTTTCCTCTTC
TTTTGCTTGTTTGTTTTCCAGATAGGGTTTCTCTGTGTAGCCCTGGCTGT
CCTGGAACTCACTCTGTAGACCAGGCTGGCGTCGAAATCAGAAATCTGCC
TGCCTCTGCCTCCCTAGTGTTGGGATCAAAAGGGTGTAACATCACGCCCG
GCTCCGGTTAAGTTTTCTTTTTGGATCCTGGTAAGATTTTGGTTTTGGTT
TTTTGAGACAGGATCTCTCTGTGTAGCCCTGCCCGGATTGGAACTCTGTA
AAACAAGTTGGGCTTTTATATCACAAATCCTTCCTTGTATTCTGCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_g09.b1 MSMg01no521_g09.b1 CHROMAT_FILE:
MSMg01no521_g09.b1 PHD_FILE: MSMg01no521_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:43 2005
         (487 letters)



>mm_chr5_114178367_114179253
          Length = 887

 Score =  903 bits (467), Expect = 0.0
 Identities = 479/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatctttccctgagtcagtcccttggtgcggcaggctctttcctcttgtaagc 64
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatcccaccctgagtcagtcccttggtgcggcaggctctttcctcttgtaagc 264

                                                                       
Query: 65  ctttgtgtgtgcctcgagaggccttctccttcctctcaaccctgcttcctcaaccccttt 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttgcgtgtgcctcgagaggccttctccttcctctcaaccctgcttcctcaaccccttt 324

                                                                       
Query: 125 ccccactgtaaacaccagtataaaatggcccttcgtccaaggccttctaccctgccacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccccactgtaaacaccagtataaaatggcccttcgtccaaggccttctaccctgccacca 384

                                                                       
Query: 185 ccttatcacttttgattgtcttggtccctccttcggcatcatctcgttcacttatggaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttatcacttttgattgtcttggtccctccttcggcatcatctcgttcacttatggaat 444

                                                                       
Query: 245 gtcagccttcctaactcaccagtacatagcgtggatctgtgccaccctcgtatggtacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcagccttcctaactcaccagtacatagcgtggatctgtgccaccctcgtatggtacaa 504

                                                                       
Query: 305 ccagaaatggaacagagagacagagactgagtcagtctagaggggacgctgtgggttggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagaaatggaacagagagacagagactgagtcagtctagaggggacgctgtgggttggg 564

                                                                       
Query: 365 atggaggagtacagtgccatggtacagttcttgcacagtgtgcatggcatcccatggaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggaggagtacagtgccatggtacagttcttgcacagtgtgcatggcatcccatggaca 624

                                                                       
Query: 425 atcccctgcactgcataaactgggcatggtggtatccatctccaacccagcgctccagag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcccctgcactgcataaactgggcatggtggtatccatctccaacccagcgctccagag 684

              
Query: 485 gtg 487
           |||
Sbjct: 685 gtg 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no521_g09.g1 MSMg01no521_g09.g1 CHROMAT_FILE:
MSMg01no521_g09.g1 PHD_FILE: MSMg01no521_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:44 2005
         (451 letters)



>mm_chr5_114368176_114369026
          Length = 851

 Score =  857 bits (443), Expect = 0.0
 Identities = 449/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagagtagagtaagcaaaaacatctggcttcattggtgacctcgccgcaggaatacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tctagagtagagtaagcaaaaacatctggcttcattggtgacctcgccgcaggaatacgc 414

                                                                       
Query: 61  agtacaaaaaggaaataggggcttccttttctctgcccctcatattagacatatcagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agtacaaaaaggaaataggggcttccttttctctgcccctcatattagacatatcagggc 354

                                                                       
Query: 121 cttgattcgttattattaggttctaagaattatctactcagcatccaagacatcagagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cttgattcgttattattaggttctaagaattatctactcagcatccaagacatcagagga 294

                                                                       
Query: 181 tttggaaaaacttaaaggagtgggagtttccttggtatttgacatgaccttgtttaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttggaaaaacttaaaggagtgggagtttccttggtatttgacatgaccttgtttaccta 234

                                                                       
Query: 241 agcggcagatggcataaggaagccacagacatttcagttggacccgggttcaaattccag 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agcggcagatgccataaggaagccacagacatttcagttggacccgggttcaaattccag 174

                                                                       
Query: 301 tcacacttcctacaagctgtgtgaccctggacaggtttttggacctctctgagccttact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tcacacttcctacaagctgtgtgaccctggacaggtttttggacctctctgagccttact 114

                                                                       
Query: 361 tagtttcctcttcttttgcttgtttgttttccagatagggtttctctgtgtagccctggc 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tagtttcctcttcttttgtttgtttgttttccagatagggtttctctgtgtagccctggc 54

                                          
Query: 421 tgtcctggaactcactctgtagaccaggctg 451
           |||||||||||||||||||||||||||||||
Sbjct: 53  tgtcctggaactcactctgtagaccaggctg 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)