Query= MSMg01no521_h02.b1 MSMg01no521_h02.b1 CHROMAT_FILE:
MSMg01no521_h02.b1 PHD_FILE: MSMg01no521_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:47 2005
(676 letters)
>mm_chr5_142216959_142218034
Length = 1076
Score = 1276 bits (660), Expect = 0.0
Identities = 669/672 (99%)
Strand = Plus / Plus
Query: 5 gaattctcagccctaaaaggaacatctatactgtgccacaccctccttgaggctcaggga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagccctaaaaggaacatctatactgtgccacaccctccttgaggctcaggga 264
Query: 65 tcatttcagaagatggcatggaaagagcttgagagtcagaggcagtgtatgaccacaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatttcagaagatggcatggaaagagcttgagagtcagaggcagtgtatgaccacaagg 324
Query: 125 aaactgtcttctggacacagcacaacagctgcacaaaggagctcacaatggctgaatcag 184
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 325 aaactgtcttctggacacagcacaacagctgcacaaaggagctcacaaaggctgaagcag 384
Query: 185 aactcacaaaacctctgcaagcttaagccagaccaacctcagcaagaagagagcagctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aactcacaaaacctctgcaagcttaagccagaccaacctcagcaagaagagagcagctgg 444
Query: 245 gtatactatcccaccataagccctggagttattagctgccaggatagggagagcactgtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatactatcccaccataagccctggagttattagctgccaggatagggagagcactgtc 504
Query: 305 tctgagtatagcccctgtgagtcagcccctatccagtggaaaaccacacatccaagagta 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 tctgagtatagcccctgtgagtcaacccctatccagtggaaaaccacacatccaagagta 564
Query: 365 tttggacagcactaattgatttttgaagcatttctaaaaagcaaaacaagaaaaggatac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttggacagcactaattgatttttgaagcatttctaaaaagcaaaacaagaaaaggatac 624
Query: 425 aaagttggttgggtaggaaaggggcagtgaatatgatgttgtatgaaaccctcaaagaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagttggttgggtaggaaaggggcagtgaatatgatgttgtatgaaaccctcaaagaaa 684
Query: 485 tatcttttgaaaagaagcgttacatcatcatactggaattgaatcgtaaaggaattcagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatcttttgaaaagaagcgttacatcatcatactggaattgaatcgtaaaggaattcagt 744
Query: 545 ctgtaacctcacagagcagcgtcaggtagaagcctttctgctcagctagtgctgctgggt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgtaacctcacagagcagcgtcaggtagaagcctttctgctcagctagtgctgctgggt 804
Query: 605 tccacgcagcatgctggtgggcgggccctgctaattaaggtggaagtctaccattgtccg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tccacgcagcatgctggtgggcgggccctgctaattaaggtggaagtctaccattgtccg 864
Query: 665 acagctctcttc 676
||||||||||||
Sbjct: 865 acagctctcttc 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_h02.g1 MSMg01no521_h02.g1 CHROMAT_FILE:
MSMg01no521_h02.g1 PHD_FILE: MSMg01no521_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:47 2005
(671 letters)
>mm_chr5_142367541_142368611
Length = 1071
Score = 1236 bits (639), Expect = 0.0
Identities = 664/673 (98%), Gaps = 3/673 (0%)
Strand = Plus / Minus
Query: 1 tgtcccaggcaccttcctgtcctgacctttccattcatgctgggagacaaactcatggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tgtcccaggcaccttcctgtcctgacctttccattcatgctgggagacaaactcatggga 658
Query: 61 tgtgggagtgtcatcgttgtgcaacatggagcagtaagagatattagctgcatgtatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgtgggagtgtcatcgttgtgcaacatggagcagtaagagatattagctgcatgtatgat 598
Query: 121 gacctgtctgcaaggcaacggtaaaaatccgagactcgcctcacacaatacatttttact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gacctgtctgcaaggcaacggtaaaaatccgagactcgcctcacacaatacatttttact 538
Query: 181 tattgccaggtcagactcagaagaaatgtgacaacatgtccatgaaatggacaggatctc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 537 tattgccaggtcagactcagaagaaatgtgacaacgtgtccatgaaatggacaggatctc 478
Query: 241 catatttttataataactcaggatctatgcaacgaaaacaatcggttacattttgattaa 300
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 477 catatttttataatagctcaggatctatgcaatgaaaacaatcggttacattttgattag 418
Query: 301 tttggtaagggtgagaccagagtcttcggagaagtttgccttcatttgtaagcctcaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttggtaagggtgagaccagagtcttcggagaagtttgccttcatttgtaagcctcaggg 358
Query: 361 cctgggagagtcatttaagtagtgaatgttgtcaggggcttgggcacaatgagttacagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cctgggagagtcatttaagtagtgaatgttgtcaggggcttgggcacaatgagttacagt 298
Query: 421 gagttactttatatgtcaatctgcggctatatctaattcaggaattgaatgtagttaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gagttactttatatgtcaatctgcggctatatctaattcaggaattgaatgtagttaaat 238
Query: 481 aatctgtccttctatctgtttgtctacaaatttctcaatccatccatccatccattcatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aatctgtccttctatctgtttgtctacaaatttctcaatccatccatccatccattcatc 178
Query: 541 tgtgtatctatgtatatgtatgtatttattatatatgt--gtgtattatgtatatgtacc 598
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 177 tgtgtatctatgtatatgtatgtatttattatatatatatgtgtattatgtatatgtacc 118
Query: 599 tatttatctgtctgaaattt-cctacttatcatctggttatatgtctaatatctgtctat 657
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 117 tatttatctgtctgaaatttacctacttatcatctgtttatatgtctaatatctgtctat 58
Query: 658 ctatctatctatc 670
|||||||||||||
Sbjct: 57 ctatctatctatc 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
