Query= MSMg01no521_h15.b1 MSMg01no521_h15.b1 CHROMAT_FILE:
MSMg01no521_h15.b1 PHD_FILE: MSMg01no521_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:49 2005
(684 letters)
>mm_chr5_90586644_90587727
Length = 1084
Score = 652 bits (337), Expect = 0.0
Identities = 352/357 (98%), Gaps = 1/357 (0%)
Strand = Plus / Minus
Query: 4 ggaattccaaagtggagactgtaaacaaagaagctggtacatatttggagagaatacttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggaattccaaagtggagactgtaaacaaagaagctggtacatatttggagagaatacttg 297
Query: 64 gatgggttatcgaaggagtttccaggccagctttgtggcttttatgtagtcagtgcattt 123
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 296 gatgggttatcgaaggagtttccaggccagcttagtggcttttatttagtcagtgcattt 237
Query: 124 cactaaacttcattcacgtaaaaaagacccaaaggggctagagatatctcagtggttaag 183
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 236 cactaaacttcattcacgtaaaaaagacccaaagggtctagagatagctcagtggttaag 177
Query: 184 agcactggctgctcttttttttgtttgtttatttaaaaatatttatttattttatttata 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 agcactggctgctc-tttttttgtttgtttatttaaaaatatttatttattttatttata 118
Query: 244 tgagtacactgcagcggtcttcagacacatcataagaaggcatcggatcctattatagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tgagtacactgcagcggtcttcagacacatcataagaaggcatcggatcctattatagat 58
Query: 304 ggttgtgagccaacttgtggttgttgggaattgaacacaggacctctaaaagagcag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 ggttgtgagccaacttgtggttgttgggaattgaacacaggacctctaaaagagcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_h15.g1 MSMg01no521_h15.g1 CHROMAT_FILE:
MSMg01no521_h15.g1 PHD_FILE: MSMg01no521_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:49 2005
(596 letters)
>mm_chr5_90538589_90539584
Length = 996
Score = 1114 bits (576), Expect = 0.0
Identities = 590/596 (98%), Gaps = 3/596 (0%)
Strand = Plus / Plus
Query: 1 taaaactgcagagagagctagggaggtgggagtgaacctaagagaagttgggggaaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaactgcagagagagctagggaggtgggagtgaacctaagagaagttgggggaaggat 260
Query: 61 gaacaagatcaaaatacattatgtacaattctgaagaattagtaaaatatggttttaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacaagatcaaaatacattatgtacaattctgaagaattagtaaaatatggttttaaca 320
Query: 121 taaaattcaaacaataaaatagttgcctactgtaagatagttgctattgcttttaaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaattcaaacaataaaatagttgcctactgtaagatagttgctattgcttttaaaatg 380
Query: 181 caaagaaatgaaagttacatggtatttttgataaatgatacaaaaaataaacatacaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagaaatgaaagttacatggtatttttgataaatgatacaaaaaataaacatacaaaa 440
Query: 241 taggtgatagacatttaaaaagtattaactgagtcagttgtagattttcaataataaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggtgatagacatttaaaaagtattaactgagtcagttgtagattttcaataataaaag 500
Query: 301 atggcattgtgaccaatgaatggagagatatcagaatatctcaggtccaaataaaatgtt 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 atggcattgtgaccactgaatggagagatatcagaatatctcaggtccaaatagaatgtt 560
Query: 361 accacaaagagcagcaaagggaactgggcatagtgggccatgtctgtagtcccagcactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accacaaagagcagcaaagggaactgggcatagtgggccatgtctgtagtcccagcactc 620
Query: 421 cagagccaaaggcaggaggatctctatgaattcaaggacagtctggtccacacactgagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagagccaaaggcaggaggatctctatgaattcaaggacagtctggtccacacactgagt 680
Query: 481 tcagaacagccagagctacatagtaagactctgtttcaaaagggaaaaaaggggcaaaca 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tcagaacagccagagctacatagtaagactctgtttcaaaaggaaaaaaaggggcaaaca 740
Query: 541 gcaacaacaacaaaaggaaatgttgtcaacttatgtttacatttatttatttctct 596
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 gcaacaacaacaaaaggaaatgt---caacttatgtttacatttatttatttctct 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
