BAC Information

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BAC

Clone NameMSMg01-521I06
Chromosome5 (Build37)
Map Location 87,683,697 - 87,684,352
singlet/doubletsinglet
Overlap geneUgt2b37
Upstream geneTmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848
Downstream geneLOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521I06.T7 (MSMg01no521_i06.b1)MSMg01-521I06.TJ (MSMg01no521_i06.g1)
ACCAG592293AG592294
length739729
length of high quality
(start - end)
660 (53 - 712)383 (84 - 466)
definitionCHROMAT_FILE: MSMg01no521_i06.b1 PHD_FILE: MSMg01no521_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:52 2005CHROMAT_FILE: MSMg01no521_i06.g1 PHD_FILE: MSMg01no521_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATCGGCCACACCAACACTTTCCCACATTTCACAGATC
TGAAGCAGCAACTTATCTGCAGCAGCAACAGAGCAGAAATCCACATTCCA
GGCATCCTGAAAATCAAAATCCTTCTCTTCACAGTTCATTTGCTTCTGTC
ACTGCTTGACCTTTTATCCAAGAAGCTTCAGCCCAGAGGTTAAACTATAA
CTTGCATTTCCCAGAGCTGATAATTAAAAGACCAGAACTAAGGTTTTGGG
AAAAGAATCGAAGAATGATTTCAATTATTCCCTGTTTACATGAGAGTGAG
TCACGTCTCTTATGATGGCATGTTTTCAAATAGCCAAGAAATAATGATGT
CATGTTCAATTATTAATGGGATATTAGAATATTCTAAGATGTCTCACAAA
ACTAGTGACATCATAATATGGCTGATCTCTGAATTCTCCTCTATATGGCC
TTGAAAGCTTATTAATTTACATAGTTGAATGTCATGATGACTCTTCCCTT
TCCTTTAATGTGACCAATTATTCTGACTAAATCATGGACTGTTCTAATAA
TCAATCCAATATTAGAAATAACAGACTTCATTTAAAAGGCTGGTTCTAGA
CAGTTTTAGAGACATATTTGAAAGTTAGCTACAGTTTTCTATGATGATAT
GTTAACAATAGATGGGGACGGGTTATAGCAAATATTAAG
NNTTTTCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAAAAGAGTCTCA
AATGGCCCAGAAAAAACTAAAGAAATGTTCAAGGTACTTAGTCATCAGGG
AAATGCAAATCAAGATGACTGTGACAATCCACCTTATACTCATCAGAATG
GCTAAGATAAATACTCAAGGAATAGTACATGTTGGTAAGGTTATGAAGAA
AGAACACTAGTCCACTTGTTGTAGGAGTGCAAACTTGTACAACCACTTGT
GAAATCAATTTGGCATTTTCTCAAAAAATTAGGAAAAGTTTTACCTCAAG
ATTCAGCTCTACCATTCCTGGACATATAGCCAAATGATGCTCCACGATCT
CAGGAGGACACTTGTTCAATTGTGTTCATAGTCACTTTATTCATAATAGC
CAGAAACTGGAAACAACCTAGATGTTCCTCAACTGAAAGATGGAAAAAAG
AAAATTTGGTTTACTTGGTTGGAGGAAAACCTTCAAGCCCTTTAAAATCC
AAGGTCACCTTTTAATTTTTTTTCAAAACCTTTATGGGGGTCTCTAAAAA
TATCCCTACCTGGGGGGGGGGGACCCCCCCAAACCCCAAAGGGGAAGCGG
CGGGGGGGAAAAAACTCCTCCCCTAAAAAGGGGGGGGTTGTTAAGAGCCC
CCCAAGAACGCGGGGGGGAAACCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_i06.b1 MSMg01no521_i06.b1 CHROMAT_FILE:
MSMg01no521_i06.b1 PHD_FILE: MSMg01no521_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:52 2005
         (660 letters)



>mm_chr5_87683493_87684552
          Length = 1060

 Score = 1261 bits (652), Expect = 0.0
 Identities = 655/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcggccacaccaacactttcccacatttcacagatctgaagcagcaacttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcggccacaccaacactttcccacatttcacagatctgaagcagcaacttat 264

                                                                       
Query: 65  ctgcagcagcaacagagcagaaatccacattccaggcatcctgaaaatcaaaatccttct 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ctgcagcagcaacagagcagaaatccactttccaggcatcctgaaaatcaaaatccttct 324

                                                                       
Query: 125 cttcacagttcatttgcttctgtcactgcttgaccttttatccaagaagcttcagcccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcacagttcatttgcttctgtcactgcttgaccttttatccaagaagcttcagcccag 384

                                                                       
Query: 185 aggttaaactataacttgcatttcccagagctgataattaaaagaccagaactaaggttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggttaaactataacttgcatttcccagagctgataattaaaagaccagaactaaggttt 444

                                                                       
Query: 245 tgggaaaagaatcgaagaatgatttcaattattccctgtttacatgagagtgagtcacgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggaaaagaatcgaagaatgatttcaattattccctgtttacatgagagtgagtcacgt 504

                                                                       
Query: 305 ctcttatgatggcatgttttcaaatagccaagaaataatgatgtcatgttcaattattaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcttatgatggcatgttttcaaatagccaagaaataatgatgtcatgttcaattattaa 564

                                                                       
Query: 365 tgggatattagaatattctaagatgtctcacaaaactagtgacatcataatatggctgat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggatattagaatattctaagatgtctcacaaaactagtgacatcataatatggctgat 624

                                                                       
Query: 425 ctctgaattctcctctatatggccttgaaagcttattaatttacatagttgaatgtcatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctgaattctcctctatatggccttgaaagcttattaatttacatagttgaatgtcatg 684

                                                                       
Query: 485 atgactcttccctttcctttaatgtgaccaattattctgactaaatcatggactgttcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgactcttccctttcctttaatgtgaccaattattctgactaaatcatggactgttcta 744

                                                                       
Query: 545 ataatcaatccaatattagaaataacagacttcatttaaaaggctggttctagacagttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ataatcaatccaatattagaaataacagacttcatttaaaaggctggttctagacagttt 804

                                                                   
Query: 605 tagagacatatttgaaagttagctacagttttctatgatgatatgttaacaataga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagagacatatttgaaagttagctacagttttctatgatgatatgttaacaataga 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)