Query= MSMg01no521_j10.b1 MSMg01no521_j10.b1 CHROMAT_FILE:
MSMg01no521_j10.b1 PHD_FILE: MSMg01no521_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:58 2005
(629 letters)
>mm_chr5_49455598_49456621
Length = 1024
Score = 1129 bits (584), Expect = 0.0
Identities = 617/630 (97%), Gaps = 7/630 (1%)
Strand = Plus / Minus
Query: 1 actttttaacaattagaatattcaacatccaaatggggaaagcattctttcagtggatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 actttttaacaattagaatattcaacatccaaatggggaaagcattctttcagtggatgt 765
Query: 61 gaaccgtaaaagcatatcatttgctttaaacaacaattcacaatgtagctttcaggtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaaccgtaaaagcatatcatttgctttaaacaacaattcacaatgtagctttcaggtgct 705
Query: 121 catgaaaagtaaaaacagggatttctcctcctgcctttcctttcctgtctcagagatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 catgaaaagtaaaaacagggatttctcctcctgcctttcctttcctgtctcagagatgtg 645
Query: 181 caatgttacagagtataaattagcatatattagtaggaattagtacgattctattctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 caatgttacagagtataaattagcatatattagtaggaattagtacgattctattctctc 585
Query: 241 agagtgtctgacccttttaggtctagttagccccttctaaaacctgagccatcttattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agagtgtctgacccttttaggtctagttagccccttctaaaacctgagccatcttattat 525
Query: 301 aaagcgttgtaagtctcggggatactgcacaagtttagtgaaaaatcagagctacattct 360
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 524 aaagcgttgtaagtctcggggttactgaacaagtttagtgaaaaatcagagctacattct 465
Query: 361 cagttttctctttgtccaaagcatctttcttgagcccgttctgtactggtaactgggcgt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 464 cagttttctctttgtccaaagcatctttcttgagcccgttctgtactggtaactggatgt 405
Query: 421 tgcttgtatctggaactttgttccactgctaggcaagagcttgagtgcaggagctgttcc 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 404 tgcttgtatctggaactttgttccactgctaggcaagagcttgagtgaaggagctgttcc 345
Query: 481 accagcacttgcttcccttgcctgcaggatctcccaggagctacctaccagcactaaccc 540
| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 344 atcagcacttgct-cccttgcctgcaggatctcccaggagctacc----agcactaaccc 290
Query: 541 ca-tgctcactgcttacatgaaggagatatcaaaacacctaaagttgtgctttaccttga 599
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 -agtgctcactgcttacatgaaggagatatcaaaacacctaaagttgtgctttaccttga 231
Query: 600 acaacatccattgctatgaggatttccact 629
||||||||||||||||||||||||||||||
Sbjct: 230 acaacatccattgctatgaggatttccact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1024
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1014
Effective search space: 627666
Effective search space used: 627666
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_j10.g1 MSMg01no521_j10.g1 CHROMAT_FILE:
MSMg01no521_j10.g1 PHD_FILE: MSMg01no521_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:58 2005
(601 letters)
>mm_chr5_49303355_49304355
Length = 1001
Score = 1079 bits (558), Expect = 0.0
Identities = 591/602 (98%), Gaps = 2/602 (0%)
Strand = Plus / Plus
Query: 1 ttagaaagtttcctaggatgttacctgcctgaatctttgaaagttactgtctcctggatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaagtttcctaggatgttacctgcctgaatctttgaaagttactgtctcctggatg 260
Query: 61 tctcttagaaaaatatcccattatttttcagtttctctgatctttgagttgcctcgtagc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tctcttagaaaaatatcccattatttttcagtttctctgatctttgagttgcctcgtacc 320
Query: 121 ttgttaaacatcaatgcacactagctccctggcaaggtgagtcaccttctgcttgtgctc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttaaacatcaatgaacactagctccctggcaaggtgagtcaccttctgcttgtgctc 380
Query: 181 atatcttcctacctaaaaaaagacacacacaaatacaaacatacgatggacctaaaaaaa 240
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgttcctatctaaaaaaagacacacacaaatacaaacatacgatggacctaaaaaaa 440
Query: 241 aaatctttctacaatagttaactcaaaaccattgaattcaatattaaaaataatattact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatctttctacaatagttaactcaaaaccattgaattcaatattaaaaataatattact 500
Query: 301 ttgtagtagtagtctttcaaaatcatcttaatcatattaatgaataacaaaataatgtca 360
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ttgtagtaatagtctttcaaaatcatcttaatcatattaaggaataacaaaataatgtca 560
Query: 361 t-agcttatggtcagtcccattgattagtacggcccataatggaatgctattaagtacaa 419
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 ttagcttatggtcagtcccattgattagtatggcccataatggaatgctattaagtacaa 620
Query: 420 taaatatgtgaatgttttacaaattaaaatgatattagttcgtaaaaatcttttactagt 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 taaatatgtgaatgttttacaaattaaaatgatattagttcgtaaaa-tcttttactagt 679
Query: 480 tatatttactgtattttgggcatgttgatagtcatgaatgaaaatgtatttcttgctgta 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 680 tatatttactgtattttgggcatgttgatagtcatgactgaaaatgtatttcttgctgta 739
Query: 540 gttcatcattaaaaagtttgtttggggctgtatgactaaacagtgataattcaatacaca 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 740 gttcatcattaaaaagtttgtttggggctatatgactaaacagtgataattcaatacaca 799
Query: 600 ta 601
||
Sbjct: 800 ta 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
