Query= MSMg01no521_l12.b1 MSMg01no521_l12.b1 CHROMAT_FILE:
MSMg01no521_l12.b1 PHD_FILE: MSMg01no521_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:08 2005
(668 letters)
>mm_chr5_84357637_84358704
Length = 1068
Score = 1268 bits (656), Expect = 0.0
Identities = 665/668 (99%)
Strand = Plus / Plus
Query: 1 atgcatttggaagattactcaattaaaaactatactagttaactgtttaatagttggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcatttggaagattactcaattaaaaactatactagttaactgtttaatagttggaat 260
Query: 61 ttccaatatacattaatgcattatactaggtttgttggatagtcataaaatttaggggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaatatacattaatgcattatactaggtttgttggatagtcataaaatttaggggtt 320
Query: 121 taaaaggtttcagcaaaagtagtcactttcactaaacaacttaggtcattaatgaataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaggtttcagcaaaagtagtcactttcactaaacaacttaggtcattaatgaataaa 380
Query: 181 gaattgagactattttacagaactaaatttcataacatttttatgaactaacaactgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattgagactattttacagaactaaatttcataacatttttatgaactaacaactgaat 440
Query: 241 ttgctatggtctcaagattggtagcagaactcataacctcctgggtcagagacaaattat 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctatggtctcaagattgttagcagaactcataacctcctgggtcagagacaaattat 500
Query: 301 tctattaaaattggctgagcaggcagcctgaggagtggtacctttgtgtcagttttgtat 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctattaaaattgactgagcaggcagcctgaggagtggtacctttgtgtcagttttgtat 560
Query: 361 acaacctaaaagacatgaatgcatgtacttgacagcaggttccatcgtaacagcaatatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaacctaaaagacatgaatgcatgtacttgacagcaggttccatcgtaacagcaatatg 620
Query: 421 agtttagaaagcaatttcattgtgttggacagtaagtatgcatctccttggccattatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttagaaagcaatttcattgtgttggacagtaagtatgcatctccttggccattatta 680
Query: 481 taaatgatatactattttcatcttaaatttattctagaggaacaagtcccacgtcttcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatgatatactattttcatcttaaatttattctagaggaacaagtcccacgtcttcca 740
Query: 541 aggatgttcatcagagcaaatgcacttgaaagagagcctacatcttggctcataattcat 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 aggatgttcatcagagcaaatgcacttgaaaaagagcctacatcttggctcataattcat 800
Query: 601 tattaaatttaatagtcacatgaactactatcttcaaatactctgctgatataggtattt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tattaaatttaatagtcacatgaactactatcttcaaatactctgctgatataggtattt 860
Query: 661 gtatcata 668
||||||||
Sbjct: 861 gtatcata 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l12.g1 MSMg01no521_l12.g1 CHROMAT_FILE:
MSMg01no521_l12.g1 PHD_FILE: MSMg01no521_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:08 2005
(616 letters)
>mm_chr5_84491893_84492907
Length = 1015
Score = 1060 bits (548), Expect = 0.0
Identities = 605/634 (95%), Gaps = 19/634 (2%)
Strand = Plus / Minus
Query: 1 attacacataatttaatgtgttctcaaagcactcataggagagcttgctagtctctgtac 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 747 attacacataatttactgtgttctcaaagcactcataggagagcttgctattctctgtac 688
Query: 61 tctatgcaattaagctaaaattccaacagcctatttaaaaaaaa------aaaagaaaag 114
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 687 tctatgcaattaagctaaaattccaacagcctgttaaaaaaaaaaaaaagaaaagaaaag 628
Query: 115 aaaagaaaaacaaggtctcatctctacaaaacaactgattattctcttgacaaatatatt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaaagaaaaacaaggtctcatctctacaaaacaactgattattctcttgacaaatatatt 568
Query: 175 taccttgcacagacctcataactgactattcagaatttaaaaaataaactaggaaaaaaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 taccttgcacagacctcataactgactattcagaatttaaaaaataaactagg-aaaaaa 509
Query: 235 gctgacatcccaaggctccatgataaaactgataaaggcaacattttatgaagttgagtg 294
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctgacatcgcaaggctccttgataaaactgataaaggcaacattttatgaagttgagtg 449
Query: 295 aatattcatttctctctcatgtcccttctaacatccagctagtagtgatagaaattaatt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aatattcatttctctctcatgtcccttctaacatccagctagtagtgatagaaattaatt 389
Query: 355 ctactgacatggcaacaaggtatataaagcacaatggagaataaacaaactc--tgtgtg 412
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 388 ctactgacatggcaacaaggtatataaagcacaatggagaataaacaaactctgtgtgtg 329
Query: 413 tgtgtgtcatctgtctctctgtctgtctgtctctctttgtctccgtatctctctgtctct 472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 328 tgtgtgtcatctgtctctctgtctgtctgtctctctttgtctccatatctctctgtctct 269
Query: 473 ctgactctccatctgtctctgtctgtctatctgt----------ctctctgtctctgtct 522
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 268 ctgactctccatctgtctctgtctgtctatctgtctctctttgcctctctgtctctgtct 209
Query: 523 ctctgtctctctggtatctacatatagctaccctgttgagcacatgtatgcatataccac 582
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 208 ctctgtctctctggtatctacatatagctacactgttgagcacatgtatgcatataccac 149
Query: 583 atgtgcacactcacgaacgcaacattcatgcaca 616
|||||||||||||| |||||||||||||| ||||
Sbjct: 148 atgtgcacactcacaaacgcaacattcatacaca 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
