Query= MSMg01no521_l18.b1 MSMg01no521_l18.b1 CHROMAT_FILE:
MSMg01no521_l18.b1 PHD_FILE: MSMg01no521_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:09 2005
(676 letters)
>mm_chr9_19887515_19888590
Length = 1076
Score = 331 bits (171), Expect = 1e-94
Identities = 539/689 (78%), Gaps = 82/689 (11%)
Strand = Plus / Plus
Query: 31 tggctaattctagctgaagttttggctagagacatttttatttctaagccagtttcagga 90
||||||||| ||||| ||||| |||||| |||||||||||| ||||||||||||||||
Sbjct: 215 tggctaattttagctaaagttctggctatagacatttttatgtctaagccagtttcag-- 272
Query: 91 a--tg--ttcccatgtagagggatcagcaattcatgttatctgtcctgtttggt-cttct 145
| || ||||| || | |||||||| |||||||||||| |||||||||||||| ||| |
Sbjct: 273 agctgttttcccgtg-a-agggatcaacaattcatgttacctgtcctgtttggtcctt-t 329
Query: 146 tgaatttttctttcctgtc------taaagccaagatcttcaaggggtcttcctctgtca 199
| | ||||||||||||||| |||| || ||||| ||||| || | | |||
Sbjct: 330 ttattttttctttcctgtctgtaggtaaa---aa---cttcagggggt-tttatttatca 382
Query: 200 tgtctgatcc------ctttggaagaggtctaaagtcttttctcctttcctgtttaa-ac 252
|||||||||| ||| |||||||| |||| |||||||| |||||| |||| ||
Sbjct: 383 tgtctgatccatattattttaaaagaggtccaaagccttttctcttttcct-cttaacac 441
Query: 253 aaatacaaagcctctctcccaaaatag--tgtgtcctt-ggt-ctggcaacctgaaatca 308
||||| | ||||||||||||||||||| || | ||| ||| | |||||| || |
Sbjct: 442 aaatatacagcctctctcccaaaatagcatg-g--cttaggtac-agcaacc--caa--a 493
Query: 309 attga--g--tcagttcagcagc--ctcttttctttatgctggtctactctggcct-ctc 361
||||| | ||| || | |||| |||||||| ||| | ||||| ||| | |||
Sbjct: 494 attgattgtttcaatttatcagcctctcttttc-tta-g--ggtct--tct---atactc 544
Query: 362 tcccaggggatcagtaatgtcattaacaccaccaaacttataaccaccttca-ttttgat 420
| |||| | || | |||| ||||||| |||||||| ||||| ||||||| | ||||| |
Sbjct: 545 ttccagagaattattaatatcattaatgccaccaaagttatatccaccttaatttttggt 604
Query: 421 aattaaaacaac-----ta---aaaacaattgt-aagcaattattattatttgttgagat 471
|||||||||||| || ||||||||| | || |||||||| |||| ||||||| |
Sbjct: 605 aattaaaacaactggaatatttaaaacaatt-tcaaacaattatt-ttatctgttgagtt 662
Query: 472 agggtt-tctctatctccatgcctttgtttcctacatttgagatcaaaggcctggatttc 530
|| ||| |||||||||| || ||||||||||| ||||||||||||||||||| |||||
Sbjct: 663 agtgttctctctatctctgtgaatttgtttcctatatttgagatcaaaggcctgaatttc 722
Query: 531 tctattcttccacgtatagttaa--------aaacaattaccattatttctcccttctat 582
| ||||| |||| ||||| ||| |||||||||||| | ||||| ||||||
Sbjct: 723 tttattcatccatgtatacataaaagtccttaaacaattaccactgtttcttatttctat 782
Query: 583 ccttaaaacaatgcaattttcc-tttagtcctcccttctaaagagattagtatctgtgga 641
|||||||||||||||| | ||| |||| ||||||| | ||| ||||||||||||||||||
Sbjct: 783 ccttaaaacaatgcaa-tctccttttattcctcccctgtaaggagattagtatctgtgga 841
Query: 642 tatataattatatcccctttctctttata 670
|||||||||||||||||| ||||||||||
Sbjct: 842 tatataattatatcccctctctctttata 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l18.g1 MSMg01no521_l18.g1 CHROMAT_FILE:
MSMg01no521_l18.g1 PHD_FILE: MSMg01no521_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:09 2005
(542 letters)
>mm_chr5_23361362_23362303
Length = 942
Score = 1048 bits (542), Expect = 0.0
Identities = 542/542 (100%)
Strand = Plus / Plus
Query: 1 ctaaacctgttactccccgcgaggactgaggaggaaagccctgaagacttccctgtggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaacctgttactccccgcgaggactgaggaggaaagccctgaagacttccctgtggca 260
Query: 61 gaccttgctgccctaaaacaagcaattgaatacactagacagaaaatgacccctgacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccttgctgccctaaaacaagcaattgaatacactagacagaaaatgacccctgacccc 320
Query: 121 cacacacccacctctcttaatcctccactgttgccttatatccctcctgcaacgccctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacacccacctctcttaatcctccactgttgccttatatccctcctgcaacgccctct 380
Query: 181 gaagacactcaggaaactgttgaaggctccatgccttctacccctcaacaagctacctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagacactcaggaaactgttgaaggctccatgccttctacccctcaacaagctacctct 440
Query: 241 gaataattatttaagactcctccaaacttgaccacaatggaaataacaccttggctttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaataattatttaagactcctccaaacttgaccacaatggaaataacaccttggctttcc 500
Query: 301 atgttaatgttcaactcacttgatcttggttggcccttagactggcatccctaccaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttaatgttcaactcacttgatcttggttggcccttagactggcatccctaccaagct 560
Query: 361 taccaagagcttagacaggcagtttgagaggatggtattcatgccccttgggccaagtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taccaagagcttagacaggcagtttgagaggatggtattcatgccccttgggccaagtct 620
Query: 421 attctcctgaaccttcctgctgcccttaatataccacaggactggcatgacatctgttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctcctgaaccttcctgctgcccttaatataccacaggactggcatgacatctgttga 680
Query: 481 ccctccttgcctaccctcctgttcctttagtgggaggctttttatagaaatgaatgcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctccttgcctaccctcctgttcctttagtgggaggctttttatagaaatgaatgcctg 740
Query: 541 ca 542
||
Sbjct: 741 ca 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
