NTTAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATACTATTATATTTAACATGTAAAAATACATGATAGCAT
GTATTTCCCATATATAAAATCATTCCACTATATATGAGTTAATATCAAAA
ATGGGATTCTGAGACCGTTAGAAAACCAACGATCTTCAACAGTTCTATTA
ATACCAAGAAGAACAGTAAAGCTTTGTGTAGTAACTGAACCACATTTTGG
GTGATGGAGATCGGAAGACAAGACATTCAAGATCTTCAAATGCATAATAA
ACTCCAGGATATATTGGACTACATTGCCTAAACAACAAAACAACGAGTTG
TTAGAAATTGTCAACGCTGGTTTGGAAAGGGAAAAAATAAACATAAATAT
GCCCTTCTAGAACTTTTTGTGCAACAGTATAAACCCTTTATCACTTTGAT
AATAAAATAAGATCATTTGAAATATAAGAGATAGATAGATTGGGTGACAT
TACTTCACCGGGCCCATATTCCATTATTTCATTGCTTTGATATTTGATTC
ATATTAATAATGGACCAATTTTTCAAATGTTTCTTGTTTATAACATGTCT
ATTAATAAAAATAGCTAGATTAATACTTTATCATTTTTAGCCTCATTTCC
CTCATAGTCAAGAAATACTTTTTATTGTTATGATGACATAAGGGAATCTC
TGTGATGCTTAATTCCCAAACCAGAAAAAAATCTACTTCATGTTTCAGTG
G

NCCCCGATGATGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTAT
TACGAATCGGTGTTTGATTTTGTCAAATGCTCTCTCAGCATCTAACAAGA
TGATCATGTGGTTTTTGACTTTGTGTTTGTTTATATAGTGGAATATATGG
ATTTCCATGTATTAAAATATTCCTGCAGCCCTGGAATGAAGCCTACTGGA
TCATGATGGATGAATATTTTGATGTGTTCCTGAATTCGGTTAGCAAGAAT
TATATTGAGTATTTTTGCATCGACATTTATAAGGGAAATTGGTCTGAAGT
TCTCTTTGTTGGGTCTTAATGTGGTTAACGTATCAGAATAATTGTGGCTT
CATAAAATTAATTGGGTAGAGTACCTTCTGTTTCTATTTAGTGGAATATT
TTGAGGAGAATTAAAATTAGGTCTTCTTCGAAGGTCTGATAGAACTCTGC
ACTAAATCTATCTGGTCCTGGGCTGTTTTTGGTTGGGAGACTATTAATGA
CTGCTTCTATTTCTTTACGGGTTATGGGACTGTTTAGGTCATTAATCTGA
TCCTGTTTTAAATTTGGTACCTGGTATCTGTCTAGAAATTTGTCCATTTC
ATCCAGGTTTTCCAGTTTCATTTAGTATAGCCTTTTGTAGTAGGGTGTGA
TGAGGTCTGGATTTCCTCAGGTTCTGNTGGTATGTCTACCTTTTCATTT

Query= MSMg01no521_o23.b1 MSMg01no521_o23.b1 CHROMAT_FILE:
MSMg01no521_o23.b1 PHD_FILE: MSMg01no521_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:24 2005
         (696 letters)



>mm_chr5_59655867_59656961
          Length = 1095

 Score =  804 bits (416), Expect = 0.0
 Identities = 455/468 (97%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatactattatatttaacatgtaaaaatacatgatagcatgtatttcccatata 64
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 671 gaattccatactattatatttaacatgtaaaaatagatgatagcatgtatttaccatata 612

                                                                       
Query: 65  taaaatcattccactatatatgagttaatatcaaaaatgggattctgagaccgttagaaa 124
           ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 611 taaaatcattccactatatatgaattaatataaaaaatgggattctcagaccgttagaaa 552

                                                                       
Query: 125 accaacgatcttcaacagttctattaataccaagaagaacagtaaagctttgtgtagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 accaacgatcttcaacagttctattaataccaagaagaacagtaaagctttgtgtagtaa 492

                                                                       
Query: 185 ctgaaccacattttgggtgatggagatcggaagacaagacattcaagatcttcaaatgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctgaaccacattttgggtgatggagatcggaagacaagacattcaagatcttcaaatgca 432

                                                                       
Query: 245 taataaactccaggatatattggactacattgcctaaacaacaaaacaacgagttgttag 304
           ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 431 taataaattccaggatatattggactacattgcctaaacaacaaaataatgagttgttag 372

                                                                       
Query: 305 aaattgtcaacgctggtttggaaagggaaaaaataaacataaatatgcccttctagaact 364
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 371 aacttgtcaatgctggtttggaaagggaaaaaataaacataaatatgcccttctagaac- 313

                                                                       
Query: 365 ttttgtgcaacagtataaaccctttatcactttgataataaaataagatcatttgaaata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttttgtgcaacagtataaaccctttatcactttgataataaaataagatcatttgaaata 253

                                                           
Query: 425 taagagatagatagattgggtgacattacttcaccgggcccatattcc 472
           |||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 252 taagagatagatagattgggtgacattacttcaccgggtccatgttcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1095
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1085
Effective search space:   744310
Effective search space used:   744310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)