Query= MSMg01no522_c17.b1 MSMg01no522_c17.b1 CHROMAT_FILE:
MSMg01no522_c17.b1 PHD_FILE: MSMg01no522_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:42 2005
(617 letters)
>mm_chr5_50412871_50413889
Length = 1019
Score = 1158 bits (599), Expect = 0.0
Identities = 611/615 (99%), Gaps = 2/615 (0%)
Strand = Plus / Minus
Query: 5 gaattctttattattacagaaaaa-tgtatctttaaatcatattacactgctcagttatt 63
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 819 gaattctttattattaaagaaaaagtgtatctttaaatcatattacactgctcagttatt 760
Query: 64 catgagaggtattttgtggaatcacacacagtttatcactgaccacagatttatgaactg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 catgagaggtattttgtggaatcacacacagtttatcactgaccacagatttatgaactg 700
Query: 124 cttaggtgaaatcagtttctcttgttgaagctgcttggaatctgagaagggaaacttatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cttaggtgaaatcagtttctcttgttgaagctgcttggaatctgagaagggaaacttatg 640
Query: 184 ctttcaaaaatagggctgacattatatatttctatttgcagaga-tttttttttagttta 242
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 639 ctttcaaaaatagggctgacattatatatttctatttgcagagattttttttttagttta 580
Query: 243 ttgaaaataaatgaaaaaataggggttgtttacattcaaacacttaaacctctttgaggt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttgaaaataaatgaaaaaataggggttgtttacattcaaacacttaaacctctttgaggt 520
Query: 303 ggacagtggtggtcacctggagagtggagagataggatatagaaaagttaaggctgccga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggacagtggtggtcacctggagagtggagagataggatatagaaaagttaaggctgccga 460
Query: 363 cgtatgtatcttctattaagatcttacaaacttaagctagttaggacgaagaggacatct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cgtatgtatcttctattaagatcttacaaacttaagctagttaggacgaagaggacatct 400
Query: 423 tattatgaaggcttgcataggactgaaaagcccatgttatcttccaaatcaacaatttac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tattatgaaggcttgcataggactgaaaagcccatgttatcttccaaatcaacaatttac 340
Query: 483 tcccattcagcaatttaataatgattatcagtttacgacctctcctcattagtatatgct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcccattcagcaatttaataatgattatcagtttacgacctctcctcattagtatatgct 280
Query: 543 gtcacatcacgtacacatttgaagtgtcacttggaagtcagtgacagacagcaagtcact 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtcacatcacgtacacatttgaagtgtcacttggaagtcagtgacagacagcaagtcact 220
Query: 603 gtcgtctctgagaag 617
|||| ||||||||||
Sbjct: 219 gtcgcctctgagaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1019
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1009
Effective search space: 612463
Effective search space used: 612463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_c17.g1 MSMg01no522_c17.g1 CHROMAT_FILE:
MSMg01no522_c17.g1 PHD_FILE: MSMg01no522_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:42 2005
(594 letters)
>mm_chr5_50302293_50303284
Length = 992
Score = 1060 bits (548), Expect = 0.0
Identities = 582/594 (97%), Gaps = 2/594 (0%)
Strand = Plus / Plus
Query: 1 acagtgaaagtcacagctcaatcactgatgtgttcttagtttgctgacctctccacttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtgaaagtcacagctcaatcactgatgtgttcttagtttgctgacctctccacttac 260
Query: 61 atttgtgagaagaagtccagcctcataactttcacctatgatctaccagcccacattccc 120
|||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||
Sbjct: 261 atttgtgagaagaagtccaggctc--aacttttacctatgatataccagcccacattccc 318
Query: 121 cacagttgtaaccctcatttcacccaagcacgcaacttcacaaagctgtccaggaaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacagttgtaaccctcatttcacccaagcacgcaacttcacaaagctgtccaggaaatgt 378
Query: 181 gatattttctacttttgggtcacacactgctcaaataattccatctacgtgcaatatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatattttctacttttgggtcacacactgctcaaataattccatctacgtgcaatatttt 438
Query: 241 atctctagtacttatgatagatgcttttctatcctgttagagcctgttcaacacttccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atctctagtacttatgatagatgcttttctatcctgttagagcctgttcaacacttccta 498
Query: 301 atttcctctttttaaagaactttgtgcccaatgctccgacagctcactgttctactcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 atttcctctttttaaagaactttgtgcccaatgctccgacagctcactgctctactcctt 558
Query: 361 gcttagtaagtaatgagaagatgcagctgaggagggaaggcgttgggggaatatgactct 420
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 559 gcttagtaagtaatgagaagatgaagccgaggagggaaggcgttgggggaatatgactct 618
Query: 421 acctagtattagctgttaagcgctggcagtcagcatttgatctctgcatttttaggctat 480
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 619 acctagtattagctgttaagcgctggcagtcagcatttgatgtctgaatttttaggctat 678
Query: 481 aagatttggaggccagggatgatatctaagacatcagaaagagcatgaatgtagaaggaa 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aagatttggaggccagggatggtatctaagacatcagaaagagcatgaatgtagaaggaa 738
Query: 541 gttgacctattatggggttatgaaaattaagaacattctaaggaagtacttcag 594
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 739 gttgacctattatggggttatgaaaattaagaacattctgaggaagtacttcag 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 992
Length adjustment: 10
Effective length of query: 584
Effective length of database: 982
Effective search space: 573488
Effective search space used: 573488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
