BAC Information

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BAC

Clone NameMSMg01-522J08
Chromosome5 (Build37)
Map Location 84,591,779 - 84,715,003
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522J08.T7 (MSMg01no522_j08.b1)MSMg01-522J08.TJ (MSMg01no522_j08.g1)
ACCAG593106AG593107
length772769
length of high quality
(start - end)		580 (50 - 629)614 (79 - 692)
definitionCHROMAT_FILE: MSMg01no522_j08.b1 PHD_FILE: MSMg01no522_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:13 2005CHROMAT_FILE: MSMg01no522_j08.g1 PHD_FILE: MSMg01no522_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,591,779 - 84,592,353)(84,714,444 - 84,715,003)
sequence
NNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAGATTACTTAAGATGTCCAACCCAAGTCAACCAAGACCA
CTTAAAGAAAAACTTGGGATCCAGGTGTGGTAGCACATGACTCAGAAGCA
GGAAGATTGTGGGTTCAAGGCTGGCCTGTAGTATACAGCAAAATCATTGC
TCAAAAAACTGGTGATTAAAAATATTTTTAAAAATTTATCAATTTCATTT
AGGAACAAGAAGGTATATGTGTGATGTAAGATTTTGCATGTTCTGCTCTA
CAGGTCCTGTGTAGAGAGTAACCCCACTTCTGCAGATCTTCTCTGCAAGA
AGAAACTATTGTTTCAAGGTTCTAAACAAACAAGATAGCAATTCACACTA
AAGGGATTACATGGGACTTCTGTTCAAAAGAAAACAAAGTGTCTATAATT
CAAACTCTGGTGAGAGTGCTGGCCAGGCGGGAAGCGACCACCCACCATCC
TCACTCAACGTCTCAGACAGTACTGCTGTGACCTCGAGGAAGGGATAGCT
GGGCAGAAGCTCTGAGAACTACTTTCTGTAATAAAGGCTAATTGAACTAG
GTAGCTGCTTATCATAAACGCTTCTGACTCAAACCTTCATGAAGCACGCC
CGAGAGGACAGCCTAAAATCAGGCCTGGGGTGCCCTACCTTCTGATACCA
GGACTCNAAACTTGGGAACTGTTGAAAGGNTGGCAAATGAGACATCTGAT
AATCACAGTTTTAGTAAAAATG

NNCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTGAACAGAACACCAATAG
CTGTGTTCTAAGATAATGAATTGAAAAATGGACCTCAAAAGCTTCTGTAA
GTCAAAGAACACTGTCAATAGGAGAAAACAGCAACCAACTGATTGGAAAA
AGATCTTTTCTAACCCTAAATCCGATAGAGGGATAATATCAAATAACTCA
GAAAGTTAGACTTCAGAGAACCAAATAAACCTATTAAAAACTGGGAACAG
AGCTAAACAAAGAATTCTCAACTGAAGAATACCAAAATGGTTGAGAAGCA
CCTAAAGAAATGTTCAACATCCTTAGTCATCAGGGAAGTGCAAATCAAAA
CAACCCTTAGATTCCACCTCACACCAGTCAGAATTGCTAGTGTAGCTTTC
AATAACAGTTTAGATAGAGTATATATTATATGTGATATTAAAAATAAAAA
CATAATTCCATTAACAAATAATTCATCTAGTCTTAATCATTTTCTTTTAG
ATCTTGGGGAGTTCAGAAAAAGGTAGATATATGCATTTTTAATCATTTTA
TTTGTTTATATTTCAAATGATATCTCTTTCTCATTTACCCCTCCAATACA
GCCCCAATATATCGCCCTTTTCCCACTCCTCTTTGCCTCTATGAGGGTGC
TCCTTCACCCACTCACCCAATCTCATCTCACCACTCTAGCATGGCCCAAG
CTGAAGCATTCAGCCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_j08.b1 MSMg01no522_j08.b1 CHROMAT_FILE:
MSMg01no522_j08.b1 PHD_FILE: MSMg01no522_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:13 2005
         (580 letters)



>mm_chr5_84591574_84592553
          Length = 980

 Score = 1089 bits (563), Expect = 0.0
 Identities = 572/575 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcacagattacttaagatgtccaacccaagtcaaccaagaccacttaaagaaaaact 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcacagattacttaagatgtccaacccaagtcaaccaagaccacttaaagaaaaact 265

                                                                       
Query: 66  tgggatccaggtgtggtagcacatgactcagaagcaggaagattgtgggttcaaggctgg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgggatccaggtgtggtagcacatgactcagaagcaggaagattgtgggttcaaggctgg 325

                                                                       
Query: 126 cctgtagtatacagcaaaatcattgctcaaaaaactggtgattaaaaatatttttaaaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctgtagtatacagcaaaatcattgctcaaaaaactggtgattaaaaatatttttaaaaa 385

                                                                       
Query: 186 tttatcaatttcatttaggaacaagaaggtatatgtgtgatgtaagattttgcatgttct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttatcaatttcatttaggaacaagaaggtatatgtgtgatgtaagattttgcatgttct 445

                                                                       
Query: 246 gctctacaggtcctgtgtagagagtaaccccacttctgcagatcttctctgcaagaagaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 446 gctctacaggtcctgtgtagagagtaaccccacttctgcagatcttctctgtaagaagaa 505

                                                                       
Query: 306 actattgtttcaaggttctaaacaaacaagatagcaattcacactaaagggattacatgg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actattgtttcaaggttctaaacaaacaagatagcaattcacactaaagggattacatgg 565

                                                                       
Query: 366 gacttctgttcaaaagaaaacaaagtgtctataattcaaactctggtgagagtgctggcc 425
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 566 gacttctgttcaaaagaaaacaaagtgtctataattcaaactcttgtgagagtgctggcc 625

                                                                       
Query: 426 aggcgggaagcgaccacccaccatcctcactcaacgtctcagacagtactgctgtgacct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aggcgggaagcgaccacccaccatcctcactcaacgtctcagacagtactgctgtgacct 685

                                                                       
Query: 486 cgaggaagggatagctgggcagaagctctgagaactactttctgtaataaaggctaattg 545
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 686 cgaggaagggatagctgggcagaagctctgagaactactctctgtaataaaggctaattg 745

                                              
Query: 546 aactaggtagctgcttatcataaacgcttctgact 580
           |||||||||||||||||||||||||||||||||||
Sbjct: 746 aactaggtagctgcttatcataaacgcttctgact 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_j08.g1 MSMg01no522_j08.g1 CHROMAT_FILE:
MSMg01no522_j08.g1 PHD_FILE: MSMg01no522_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:13 2005
         (614 letters)



>mm_chr5_84713990_84715003
          Length = 1014

 Score = 1044 bits (540), Expect = 0.0
 Identities = 555/560 (99%)
 Strand = Plus / Minus

                                                                        
Query: 55   cctcaaaagcttctgtaagtcaaagaacactgtcaataggagaaaacagcaaccaactga 114
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 cctcaaaatcttctgtaagtcaaagaacactgtcaataggagaaaacagcaaccaactga 955

                                                                        
Query: 115  ttggaaaaagatcttttctaaccctaaatccgatagagggataatatcaaataactcaga 174
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 954  ttggaaaaagatcttttctaaccctaaatccgatagagggctaatatcaaataactcaga 895

                                                                        
Query: 175  aagttagacttcagagaaccaaataaacctattaaaaactgggaacagagctaaacaaag 234
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 894  aagttagacttcagagaaccaaataaacctattaaaaaatgggaacagagctaaacaaag 835

                                                                        
Query: 235  aattctcaactgaagaataccaaaatggttgagaagcacctaaagaaatgttcaacatcc 294
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  aattctcaactgaggaataccaaaatggttgagaagcacctaaagaaatgttcaacatcc 775

                                                                        
Query: 295  ttagtcatcagggaagtgcaaatcaaaacaacccttagattccacctcacaccagtcaga 354
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 774  ttagtcatcagggaagtgcaaatcaaaacaacccttagattccaccttacaccagtcaga 715

                                                                        
Query: 355  attgctagtgtagctttcaataacagtttagatagagtatatattatatgtgatattaaa 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  attgctagtgtagctttcaataacagtttagatagagtatatattatatgtgatattaaa 655

                                                                        
Query: 415  aataaaaacataattccattaacaaataattcatctagtcttaatcattttcttttagat 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  aataaaaacataattccattaacaaataattcatctagtcttaatcattttcttttagat 595

                                                                        
Query: 475  cttggggagttcagaaaaaggtagatatatgcatttttaatcattttatttgtttatatt 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  cttggggagttcagaaaaaggtagatatatgcatttttaatcattttatttgtttatatt 535

                                                                        
Query: 535  tcaaatgatatctctttctcatttacccctccaatacagccccaatatatcgcccttttc 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  tcaaatgatatctctttctcatttacccctccaatacagccccaatatatcgcccttttc 475

                                
Query: 595  ccactcctctttgcctctat 614
            ||||||||||||||||||||
Sbjct: 474  ccactcctctttgcctctat 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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