Query= MSMg01no522_k12.b1 MSMg01no522_k12.b1 CHROMAT_FILE:
MSMg01no522_k12.b1 PHD_FILE: MSMg01no522_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:18 2005
(613 letters)
>mm_chr5_104614233_104615245
Length = 1013
Score = 1102 bits (570), Expect = 0.0
Identities = 591/598 (98%), Gaps = 1/598 (0%)
Strand = Plus / Plus
Query: 16 ggaattcccatgagctctcaggtgttcatggagaccagaagaggatgtcagatctcctgg 75
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattcccatgagcactcaggtgttcatggagaccagaagaggatgtcagatctcctgg 275
Query: 76 agctggagtgaagccacttgtaagctgcctgatgtggatgctggaaatcaaacttgaaac 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agctggagtgaagccacttgtaagctgcctgatgtggatgctggaaatcaaacttgaaac 335
Query: 136 ctttattagcccttatactcttaattgctgagtcatctctccagtttctgacagcagtgt 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctttattagcccttatactcttaattgctgagtcatctctccagtttctgacagcagtgt 395
Query: 196 tccctaaatcccaggttgctaatcaactagtcacttattataattatatcaatttaatga 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tccctaaatcccaggttgctaatcaactagtcacttattataattatatcaatttaatga 455
Query: 256 gttacaaaaatacttaagatgaaagagtaaggtaaaatcgtaacagtgtgttgtgaaact 315
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 456 gttacaaaaatacttaagatgaaagagtaaggtaaaatcataacagtgtgttgtgaaact 515
Query: 316 atatacatatacatattgtcttagttaggaattactgctgtgaacagacaccatgaccaa 375
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 516 atatacatatacatattgtcttagttaggatttactg-tgggaacagacaccatgaccaa 574
Query: 376 tacaagtcatataaagggtaacatttaattgagatggcttacaggttcagaggttcagtc 435
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 575 tacaagtcttataaagggtaacatttaattgagatagcttacaggttcagaggttcagtc 634
Query: 436 cattatcatcaaggcatggcagcatccaggtaggcatggtgcaagaggagctgagagttc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cattatcatcaaggcatggcagcatccaggtaggcatggtgcaagaggagctgagagttc 694
Query: 496 tacatcttcacctgaaggttgctagaagaatactgacttccaggtagctaggatgagggt 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tacatcttcacctgaaggttgctagaagaatactgacttccaggtagctaggatgagggt 754
Query: 556 cttaaagcctacacccacatttacacacctactccaacaagactataccaactccaac 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cttaaagcctacacccacatttacacacctactccaacaagactataccaactccaac 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_k12.g1 MSMg01no522_k12.g1 CHROMAT_FILE:
MSMg01no522_k12.g1 PHD_FILE: MSMg01no522_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:18 2005
(653 letters)
>mm_chr5_104783486_104784538
Length = 1053
Score = 1247 bits (645), Expect = 0.0
Identities = 651/653 (99%)
Strand = Plus / Minus
Query: 1 agcttagatttattgactgggagcatggtaggaggtattgtgcttcgtgcattggttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 agcttagatttattgactgggagcatggtaggaggtattgtgcttcgtgcattggttgcc 794
Query: 61 atttaaagatagtgaagaagaagttggaatttaaagataatgaagatgctcttagcaagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 atttaaagatagtgaagaagaagttggaatttaaagataatgaagatgctcttagcaagc 734
Query: 121 cctgtccaagtttccagtgtgtcagaacagatcatgcttgctagaagggaatcaaggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cctgtccaagtttccagtgtgtcagaacagatcatgcttgctagaagggaatcaaggaaa 674
Query: 181 ggtagagatgtattgcttatttattatttattattgttattactttagggatatttgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggtagagatgtattgcttatttattatttattattgttattactttagggatatttgaag 614
Query: 241 aaatttttgttacagattaccttgctcattttctatgatgtgtaaaccttcactcctgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaatttttgttacagattaccttgctcattttctatgatgtgtaaaccttcactcctgca 554
Query: 301 agggtaaagtccttaaaaaaaaaggctctcttttaatatccacatggccttctaaggaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agggtaaagtccttaaaaaaaaaggctctcttttaatatccacatggccttctaaggaac 494
Query: 361 actttatcaactctgaactatgagtctttcacataaagcaagtgtgaggattacaaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 actttatcaactctgaactatgagtctttcacataaagcaagtgtgaggattacaaaatt 434
Query: 421 aagctgctagcacttcccagctcaggaataaaaagaattctcaagttgggtcagaagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aagctgctagcacttcccagctcaggaataaaaagaattctcaagttgggtcagaagaag 374
Query: 481 cacagattatcgagaggagattgaaaaatttataagtgaaggcagcctagaggtttggga 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 373 cacagattatcgagaggagattgaaaaatttataagtgaaggcagcctagaggtttagga 314
Query: 541 gggtaggtagctgtaccagacacagacaaggaagctgaaggcagaaagagggtgtgatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggtaggtagctgtaccagacacagacaaggaagctgaaggcagaaagagggtgtgatta 254
Query: 601 ctgctcttacaactcaacctgcagttggccgatgctgctcaccatcagtctta 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctgctcttacaactcaacctgcagttggccgatgctgctcaccatcagtctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
