Query= MSMg01no522_l08.b1 MSMg01no522_l08.b1 CHROMAT_FILE:
MSMg01no522_l08.b1 PHD_FILE: MSMg01no522_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:23 2005
(630 letters)
>mm_chr5_54774334_54775363
Length = 1030
Score = 661 bits (342), Expect = 0.0
Identities = 354/358 (98%)
Strand = Plus / Minus
Query: 5 gaattctcttccatgaaaaatagcaagattttcattagtcttcatctggaaggaaaaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaattctcttccatgaaaaatagcaagattttcattagtcttcatctggaaggaaaaata 299
Query: 65 ataatcaaaaatcttaaaagtatttgcctttaatgcttctgcaatggtttgatgtacaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ataatcaaaaatcttaaaagtatttgcctttaatgcttctgcaatggtttgatgtacaaa 239
Query: 125 tacaggttctcagaagaacatcaaatctattgcctttgggagttataggtggcctaagtt 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 238 tacaggttctcagaagaacatcaaatctcttgcctttgggagttataggtggcctaagtt 179
Query: 185 aaccaggattccccagggggaactgttcttcttagtctgagtctcatcaaagaccaaaga 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 agccaggattccccagggggaactgttcttcttagtctgagtctcatcaaagaccaaaga 119
Query: 245 cgagaccaagtccaccctctgataccttgggtgtgtatctgatggtgctcttataaaatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cgagaccaagtccaccctctgataccttgggtgtgtatctgatggtgctcttataaaatg 59
Query: 305 gacagcggggacaggtcagtcacatgcgacagaggctataatcagtcaggtgttcaca 362
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 58 gacggcggggacaggtcagtcacatgcgacagaggctataatcagtcaggtgatcaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_l08.g1 MSMg01no522_l08.g1 CHROMAT_FILE:
MSMg01no522_l08.g1 PHD_FILE: MSMg01no522_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:23 2005
(555 letters)
>mm_chr5_54655058_54656012
Length = 955
Score = 934 bits (483), Expect = 0.0
Identities = 536/557 (96%), Gaps = 9/557 (1%)
Strand = Plus / Plus
Query: 1 tctcaagaattggttcctgtttgtggcctttaaaatatggaattgatttctagtgagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tctcaagaattggttcctgtttgtggcctttaaaatatggaattgatttctagtgagaaa 266
Query: 61 cagaaaggggttgattctgatggaagtcgaggagaggagagggaaggagagaaggaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagaaaggggttgattctgatggaagtcgaggagaggagagggaaggagagaaggaactg 326
Query: 121 ggagaagtggagggaggggaagccataatcaggatatattatgtgagaaagaaaaagcta 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggagaaatggagggaggggaagccataatcaggatatattatgtgagaaagaaaaagcta 386
Query: 181 tgttcaacaacaacaacaacaaaacaatatatggatttgaggtctgtgtataaataccct 240
|||||||||||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct: 387 tgttcaacaacaacaa------aacaatatatggatttgaagtctatgtataaataccct 440
Query: 241 tgttacaaatgggtgctactgataaaactttttctttgtgcatgtgcttgcttgtatgta 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttacaaatgggtgctagtgataaaactttttctttgtgcatgtgcttgcttgtatgta 500
Query: 301 tgtgtgtgtacatacatgtgcaagtgtattcctaccatagcatgtgtgtgtggaggtcag 360
||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 501 tgtgtgtgtacctacatgtgcaagtgtattcctaccacagcacgtgtgtgtggaggtcag 560
Query: 361 agggcaaccttcagtgactctccttatcatccaccttgttct-agatagtccgtcctgtt 419
|||||||||||||||||||||||||||| ||||||||||| | ||| ||||||| |||||
Sbjct: 561 agggcaaccttcagtgactctccttatcgtccaccttgtt-tgagacagtccgttctgtt 619
Query: 420 caccattgcatgtcatgctttctcctcccagtcccctttaggca-tgccctaggctcaca 478
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 caccattgcatgtcatgctttctcctcccagtcccctttaggcaatgccctaggctcaca 679
Query: 479 cgcacgtgagctactgcatctgacttttatatgagtccaaagccgggtaagcatttgagc 538
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 680 cgcacgtgagctactgcatctgacttttttatgagtccaaagcggggtaagcatttgagc 739
Query: 539 cattgagctatgcccct 555
|||||||||||||||||
Sbjct: 740 cattgagctatgcccct 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
