Query= MSMg01no522_n24.b1 MSMg01no522_n24.b1 CHROMAT_FILE:
MSMg01no522_n24.b1 PHD_FILE: MSMg01no522_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:36 2005
(548 letters)
>mm_chr5_143080227_143081174
Length = 948
Score = 1009 bits (522), Expect = 0.0
Identities = 537/542 (99%)
Strand = Plus / Plus
Query: 7 ggaattccaagtcctgttcaagaaaccccactgggaaccatttgaccgggtcgttgcacc 66
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 207 ggaattccaagtcctgcgcaagaaaccccactgggaaccatttgaccgggtcgctgcacc 266
Query: 67 ctgagcagcaaggggatatgacctgcaacttgggacccatgtgacctgcctgctcatgcc 126
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 267 ctgagcagcaaggggatatgacctggaacttgggacccatgtgacctgcctgctcatgcc 326
Query: 127 cagagccaacaacgggtaacacaggtcatagaacaatccccctgagcaccatttcacaga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 327 cagagccaacaacgggtaacacaggtcatagaacaatccccctgagcaccatttcacgga 386
Query: 187 tgagcccagaggccatttcagaagcagaatttcccaacacccccaagtgggagagaacaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgagcccagaggccatttcagaagcagaatttcccaacacccccaagtgggagagaacaa 446
Query: 247 aacgaatcagtgtgcagctttcagatatgtgttaaactggggttggaaatgagttgtttc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aacgaatcagtgtgcagctttcagatatgtgttaaactggggttggaaatgagttgtttc 506
Query: 307 tgtttgtttttggtttgttctgttttgtcgtttgacatggggactcaatgtgggatacag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgtttgtttttggtttgttctgttttgtcgtttgacatggggactcaatgtgggatacag 566
Query: 367 acctatgaccctgagattaagagtctcatgctctacagactgagctagccgggctgcacc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 acctatgaccctgagattaagagtctcatgctctacagactgagctagccgggctgcacc 626
Query: 427 cagtgattgaattacctgttgattctgaactaagtttgtgtggtgttttccttcacgcgg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cagtgattgaattacctgttgattctgaactaagtttgtgtggtgttttccttcacgcgg 686
Query: 487 cgactcaactgggttctagagagaaaggtacggccaaggagtgcacccaaaaaggcgtgg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cgactcaactgggttctagagagaaaggtacggccaaggagtgcacccaaaaaggcgtgg 746
Query: 547 ga 548
||
Sbjct: 747 ga 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_n24.g1 MSMg01no522_n24.g1 CHROMAT_FILE:
MSMg01no522_n24.g1 PHD_FILE: MSMg01no522_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:36 2005
(531 letters)
>mm_chr5_143526293_143527224
Length = 932
Score = 984 bits (509), Expect = 0.0
Identities = 527/533 (98%), Gaps = 2/533 (0%)
Strand = Plus / Minus
Query: 1 cacaccaacctgaact-ccaagtgtaatgccagaaaccctaggtttgagcccagcctcgg 59
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 909 cacaccaacctgaactcccaagtgtaatgccagaaaccctaggtttgagctcagcctcgg 850
Query: 60 agaaactgcacatggtggtgttcacctgtgatctcagtactcaggaagaagagactggaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 agaaactgcacatggtggtgttcacctgtgatctcagtactcaggaagaagagactggaa 790
Query: 120 gattagacgttgaaggccagcctgggctatatgagacattgtctctgaagcaaaccaagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gattagacgttgaaggccagcctgggctatatgagacattgtctctgaagcaaaccaagc 730
Query: 180 agaatagggggcagcaatgggattcaagcatcagcagacagcacccccctcctca-ttgt 238
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 729 agaatagggggcagcaatgggattcaagcatcagcagacagcattcccctcctcatttgt 670
Query: 239 ctccctctctctcctcccgggaccccttgcagatgtttgctatgaaatcttccttggagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctccctctctctcctcccgggaccccttgcagatgtttgctatgaaatcttccttggagg 610
Query: 299 acatggatgcgctagagctggacttccggatgcggctggcagaggtccagcgaaggtaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acatggatgcgctagagctggacttccggatgcggctggcagaggtccagcgaaggtaca 550
Query: 359 aagagaaacagcgggagttggtcaagctccagagacgccgggactcggggtgagtgtctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aagagaaacagcgggagttggtcaagctccagagacgccgggactcggggtgagtgtctc 490
Query: 419 tctccccagtttgtgccccatcctggatagctggtccgtaggtcgactttggtagtggtc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctccccagtttgtgccccatcctggatagctggtccgtaggtcgactttggtagtggtc 430
Query: 479 aggtgtgtgcgtggacccaagtgccccactccgcttcccgccaaccccaggtt 531
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 429 aggtgtgtgcgtggacccaagtgccccactccgcttcccgcccaccccaggtt 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
