BAC Information

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BAC

Clone NameMSMg01-523F02
Chromosome5 (Build37)
Map Location 121,576,640 - 121,731,728
singlet/doubletdoublet
Overlap genePtpn11, Rpl6, LOC100039686, EG545802, AU042671
Upstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299
Downstream geneTrafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523F02.T7 (MSMg01no523_f02.b1)MSMg01-523F02.TJ (MSMg01no523_f02.g1)
ACCAG593666AG593667
length746751
length of high quality
(start - end)
573 (50 - 622)555 (88 - 642)
definitionCHROMAT_FILE: MSMg01no523_f02.b1 PHD_FILE: MSMg01no523_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:11 2005CHROMAT_FILE: MSMg01no523_f02.g1 PHD_FILE: MSMg01no523_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,731,159 - 121,731,728)(121,576,640 - 121,577,101)
sequence
TTGTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCCCATTGCTGACAGCCACACTCTACCCCCAAAGATCTAC
ATGACAACAGACTAAATTGGGACTGAGCATAAAATCTAAATTTAATTTAC
AGTTTTGCTCAGCTCCTGTGTGAGAAGGGACAGCTCATCCATATGGTCTG
CTCCTGGGATGGATGCACTCAGGTGGCTTTCATGAAAAGCCACGAAACCA
TACGAACAGGTAACAACCACGCACAATAATGAGTCAAAAACCCCTCAGTG
TGTTCCCTAGTAGTTGGGACAAAGAGCAAGCCAAATGTACAGCACCTGGT
CATTTTCTACCATGTGTTCAGAGGAACACATCTGTATGGAAAGGACTGTG
ATGGTATCATTTTACAATCTAATGTTCAGTGTCTTCAATGGCAGCTCACC
TGACAAGTTTATACATGGGAGCTTGCACACTGAGTCCCTAAATTAAAGGG
TATTAGCATTTCTCTCTTTTAAGAACACTGGAGTGCCACAGAGACTTGAC
AAGATTCTTCAAAATCAATCACCCAGGTTTCAAGGAAACAGGCGTGTCTT
ACCCAATCCTGGTACAAGAGCACCACGCCCCAGCGAGCTTCCAGCAGCAT
CTATGAGATCTGCACGACTTGCGAACTGACCATCTGAGATGTTATACACC
AAACTGGAGGCTAGGACTATGAAAACAGACAGCTATTTAATGATCC
NNTTCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCCTCAAGACGAACTGGC
ATAGGATTGGCCATGATTTTCAAGAACATTTACCTCCACAGGCAAATCTG
CTTGTACAGTTGTTCTCAAAGTACCAGAGGACAGATGGGTGTCCTGGCAG
CTTCAAGAAGCTGCACACTTAGAACTGTTGCTCCATGGTAGATTGCTTGT
GCCACTTGTCCAAGGCCCCGGGTTCCACCCTCGGATCTACAAAAGGAAGT
TTGGAGTCAGGAGTGGTATTACGTGCCGGTAATGGTAATTCCACCACTTG
GGGAATGAAGACAGAAGGGTCAGGAGTTTAGATTCACCCTCAAGTTGTTT
AGTGAATTTGAAACCAGCCTAGGTTATATGAGAACCTGGTCCCAAAGTTA
AGGGAAAAGGAAAAGAAAGGGGAAAGGGGAAAGGGAAAAGGGAAAAGGGA
AAAGGGAAAAGGGAAAAGGGAAAAGGGAAAAGGGAAAAGGGAAAAGGAAA
GGGAAAAGGAAAAGGAGGCAAGGAAAAGTAGAGGAGGGAGGGCAGATAGA
TCTGATCAAGGGCAGAAGTGGGTCCTGAGACCGAATTGGCCACAGTCCAG
TAGAGAGTGACCATTCTTTAGCTGGGAGGGTCCAGTGAGCCTCCTCCAAG
ACCATCATCCTCTGCCTGGCTCTGCTCTGGGAAGCTGAACTCTGTGGGTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_f02.b1 MSMg01no523_f02.b1 CHROMAT_FILE:
MSMg01no523_f02.b1 PHD_FILE: MSMg01no523_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:11 2005
         (573 letters)



>mm_chr5_121730956_121731928
          Length = 973

 Score = 1079 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccccattgctgacagccacactctacccccaaagatctacatgacaacagac 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaattctccccagcgctgacagccacactctacccccaaagatctacatgacaacagac 714

                                                                       
Query: 64  taaattgggactgagcataaaatctaaatttaatttacagttttgctcagctcctgtgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 taaattgggactgagcataaaatctaaatttaatttacagttttgctcagctcctgtgtg 654

                                                                       
Query: 124 agaagggacagctcatccatatggtctgctcctgggatggatgcactcaggtggctttca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agaagggacagctcatccatatggtctgctcctgggatggatgcactcaggtggctttca 594

                                                                       
Query: 184 tgaaaagccacgaaaccatacgaacaggtaacaaccacgcacaataatgagtcaaaaacc 243
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgaaaggccacgaaaccatacgaacaggtaacaaccacgcacaataatgagtcaaaaacc 534

                                                                       
Query: 244 cctcagtgtgttccctagtagttgggacaaagagcaagccaaatgtacagcacctggtca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cctcagtgtgttccctagtagttgggacaaagagcaagccaaatgtacagcacctggtca 474

                                                                       
Query: 304 ttttctaccatgtgttcagaggaacacatctgtatggaaaggactgtgatggtatcattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttttctaccatgtgttcagaggaacacatctgtatggaaaggactgtgatggtatcattt 414

                                                                       
Query: 364 tacaatctaatgttcagtgtcttcaatggcagctcacctgacaagtttatacatgggagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tacaatctaatgttcagtgtcttcaatggcagctcacctgacaagtttatacatgggagc 354

                                                                       
Query: 424 ttgcacactgagtccctaaattaaagggtattagcatttctctcttttaagaacactgga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgcacactgagtccctaaattaaagggtattagcatttctctcttttaagaacactgga 294

                                                                       
Query: 484 gtgccacagagacttgacaagattcttcaaaatcaatcacccaggtttcaaggaaacagg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtgccacagagacttgacaagattcttcaaaatcaatcacccaggtttcaaggaaacagg 234

                                         
Query: 544 cgtgtcttacccaatcctggtacaagagca 573
           ||||||||||||||||||||||||||||||
Sbjct: 233 cgtgtcttacccaatcctggtacaagagca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no523_f02.g1 MSMg01no523_f02.g1 CHROMAT_FILE:
MSMg01no523_f02.g1 PHD_FILE: MSMg01no523_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:11 2005
         (555 letters)



>mm_chr5_121576439_121577393
          Length = 955

 Score =  685 bits (354), Expect = 0.0
 Identities = 434/462 (93%), Gaps = 3/462 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   agacgaactggcataggattggccatgattttcaagaacatttacctccacaggcaaatc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agacgaactggcataggattggccatgattttcaagaacatttacctccacaggcaaatc 261

                                                                       
Query: 62  tgcttgtacagttgttctcaaagtaccagaggacagatgggtgtcctggcagcttcaaga 121
           |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct: 262 tgcttgtacatttgttctcaaagtaccagaggacaaatgggtgtcctagcagcttcaaaa 321

                                                                       
Query: 122 agctgcacacttagaactgttgctccatggtagattgcttgtgccacttgtccaaggccc 181
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 322 agctgcacacttagagctgttgctccatggcagattgcttgtgccacttgtccaaggccc 381

                                                                       
Query: 182 cgggttccaccctcggatctacaaaaggaagtttggagtcaggagtggtattacgtgccg 241
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cgggttccaccctcggagctacaaaaggaagtttggagtcaggagtggtattacgtgccg 441

                                                                       
Query: 242 gtaatggtaattccaccacttggggaatgaagacagaagggtcaggagtttagattcacc 301
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 442 gtaatggtaattccaccacttggggaataaagacagaaggatcaggagtttagattcacc 501

                                                                       
Query: 302 ctcaagttgtttagtgaatttgaaaccagcctaggttatatgagaacctggtcccaaagt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctcaagttgtttagtgaatttgaaaccagcctaggttatatgagaacctggtcccaaagt 561

                                                                       
Query: 362 taagggaa---aaggaaaagaaaggggaaaggggaaagggaaaagggaaaagggaaaagg 418
           || |||||   ||||||||||||||||||||||||| ||| || ||| |||||| || ||
Sbjct: 562 taggggaagaaaaggaaaagaaaggggaaaggggaacggggaacggggaaaggggaacgg 621

                                                     
Query: 419 gaaaagggaaaagggaaaagggaaaagggaaaagggaaaagg 460
           | || ||| |||||| || ||| || ||| |||||| |||||
Sbjct: 622 ggaacggggaaaggggaacggggaacggggaaaggggaaagg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)