Query= MSMg01no523_f02.b1 MSMg01no523_f02.b1 CHROMAT_FILE:
MSMg01no523_f02.b1 PHD_FILE: MSMg01no523_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:11 2005
(573 letters)
>mm_chr5_121730956_121731928
Length = 973
Score = 1079 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 4 ggaattctccccattgctgacagccacactctacccccaaagatctacatgacaacagac 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaattctccccagcgctgacagccacactctacccccaaagatctacatgacaacagac 714
Query: 64 taaattgggactgagcataaaatctaaatttaatttacagttttgctcagctcctgtgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 taaattgggactgagcataaaatctaaatttaatttacagttttgctcagctcctgtgtg 654
Query: 124 agaagggacagctcatccatatggtctgctcctgggatggatgcactcaggtggctttca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agaagggacagctcatccatatggtctgctcctgggatggatgcactcaggtggctttca 594
Query: 184 tgaaaagccacgaaaccatacgaacaggtaacaaccacgcacaataatgagtcaaaaacc 243
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgaaaggccacgaaaccatacgaacaggtaacaaccacgcacaataatgagtcaaaaacc 534
Query: 244 cctcagtgtgttccctagtagttgggacaaagagcaagccaaatgtacagcacctggtca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cctcagtgtgttccctagtagttgggacaaagagcaagccaaatgtacagcacctggtca 474
Query: 304 ttttctaccatgtgttcagaggaacacatctgtatggaaaggactgtgatggtatcattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttttctaccatgtgttcagaggaacacatctgtatggaaaggactgtgatggtatcattt 414
Query: 364 tacaatctaatgttcagtgtcttcaatggcagctcacctgacaagtttatacatgggagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tacaatctaatgttcagtgtcttcaatggcagctcacctgacaagtttatacatgggagc 354
Query: 424 ttgcacactgagtccctaaattaaagggtattagcatttctctcttttaagaacactgga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgcacactgagtccctaaattaaagggtattagcatttctctcttttaagaacactgga 294
Query: 484 gtgccacagagacttgacaagattcttcaaaatcaatcacccaggtttcaaggaaacagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtgccacagagacttgacaagattcttcaaaatcaatcacccaggtttcaaggaaacagg 234
Query: 544 cgtgtcttacccaatcctggtacaagagca 573
||||||||||||||||||||||||||||||
Sbjct: 233 cgtgtcttacccaatcctggtacaagagca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_f02.g1 MSMg01no523_f02.g1 CHROMAT_FILE:
MSMg01no523_f02.g1 PHD_FILE: MSMg01no523_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:11 2005
(555 letters)
>mm_chr5_121576439_121577393
Length = 955
Score = 685 bits (354), Expect = 0.0
Identities = 434/462 (93%), Gaps = 3/462 (0%)
Strand = Plus / Plus
Query: 2 agacgaactggcataggattggccatgattttcaagaacatttacctccacaggcaaatc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agacgaactggcataggattggccatgattttcaagaacatttacctccacaggcaaatc 261
Query: 62 tgcttgtacagttgttctcaaagtaccagaggacagatgggtgtcctggcagcttcaaga 121
|||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct: 262 tgcttgtacatttgttctcaaagtaccagaggacaaatgggtgtcctagcagcttcaaaa 321
Query: 122 agctgcacacttagaactgttgctccatggtagattgcttgtgccacttgtccaaggccc 181
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 322 agctgcacacttagagctgttgctccatggcagattgcttgtgccacttgtccaaggccc 381
Query: 182 cgggttccaccctcggatctacaaaaggaagtttggagtcaggagtggtattacgtgccg 241
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cgggttccaccctcggagctacaaaaggaagtttggagtcaggagtggtattacgtgccg 441
Query: 242 gtaatggtaattccaccacttggggaatgaagacagaagggtcaggagtttagattcacc 301
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 442 gtaatggtaattccaccacttggggaataaagacagaaggatcaggagtttagattcacc 501
Query: 302 ctcaagttgtttagtgaatttgaaaccagcctaggttatatgagaacctggtcccaaagt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctcaagttgtttagtgaatttgaaaccagcctaggttatatgagaacctggtcccaaagt 561
Query: 362 taagggaa---aaggaaaagaaaggggaaaggggaaagggaaaagggaaaagggaaaagg 418
|| ||||| ||||||||||||||||||||||||| ||| || ||| |||||| || ||
Sbjct: 562 taggggaagaaaaggaaaagaaaggggaaaggggaacggggaacggggaaaggggaacgg 621
Query: 419 gaaaagggaaaagggaaaagggaaaagggaaaagggaaaagg 460
| || ||| |||||| || ||| || ||| |||||| |||||
Sbjct: 622 ggaacggggaaaggggaacggggaacggggaaaggggaaagg 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|