Query= MSMg01no523_m01.b1 MSMg01no523_m01.b1 CHROMAT_FILE:
MSMg01no523_m01.b1 PHD_FILE: MSMg01no523_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:46 2005
(624 letters)
>mm_chr5_23039384_23040407
Length = 1024
Score = 1170 bits (605), Expect = 0.0
Identities = 616/621 (99%), Gaps = 4/621 (0%)
Strand = Plus / Minus
Query: 6 gaattctctgtgtttcc--ggtctcttatgctgttctaggctgttcctttcctctgttat 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattctctgtg--gccaaggtctcttatgctgttctaggctgttcctttcctctgttat 784
Query: 64 gcccgcagtccacatttggtcctggaattgattacaagttttataatgcaggctaggtca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gcccgcagtccacatttggtcctggaattgattacaagttttataatgcaggctaggtca 724
Query: 124 tcttagctccagcacagttgatgtattggagacagtgtgctatgttcatagtggtatggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcttagctccagcacagttgatgtattggagacagtgtgctatgttcatagtggtatggt 664
Query: 184 taactacttccctagcctttagcccctaagggttgttggacttgtgtggtgccttctcga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 taactacttccctagcctttagcccctaagggttgttggacttgtgtggtgccttctcga 604
Query: 244 cctcttgtttgtctcctgggtggtacagaattcactcttacctagatttgtcatctgcta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cctcttgtttgtctcctgggtggtacagaattcactcttacctagatttgtcatctgcta 544
Query: 304 ttcctaattcttgttttataactctgttttactcatttatgaatttggagtcatttgtaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttcctaattcttgttttataactctgttttactcatttatgaatttggagtcatttgtaa 484
Query: 364 tttgtggctttactatggatgttaattaaaatgagagattatcaatagagcatccattac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttgtggctttactatggatgttaattaaaatgagagattatcaatagagcatccattac 424
Query: 424 aaaagcagcactttactgctttccttggagctgtcaatcattgtaatacatgctactctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaagcagcactttactgctttccttggagctgtcaatcattgtaatacatgctactctg 364
Query: 484 tgtgtcttctttcatatgttaggaagttctgaagttggttcatatttctttaaggcagaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgtgtcttctttcatatgttaggaagttctgaagttggttcatatttctttaaggcagaa 304
Query: 544 acatgtttattggcgtatttgttttatgattttattgggtttttatgtctcttatctccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acatgtttattggcgtatttgttttatgattttattgggtttttatgtctcttatctccc 244
Query: 604 tttaactttccaccctaatcc 624
|||||||||||||||||||||
Sbjct: 243 tttaactttccaccctaatcc 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_m01.g1 MSMg01no523_m01.g1 CHROMAT_FILE:
MSMg01no523_m01.g1 PHD_FILE: MSMg01no523_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:46 2005
(531 letters)
>mm_chr5_22858735_22859665
Length = 931
Score = 1019 bits (527), Expect = 0.0
Identities = 530/531 (99%)
Strand = Plus / Plus
Query: 1 tttactatcaacagaggactgaaaaatctccatcttcatgaagtgtgagcatgggggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactatcaacagaggactgaaaaatctccatcttcatgaagtgtgagcatgggggaaa 260
Query: 61 tgcatagttcacagggtcagcaggatttacaaggtaggttaagtcaagatggttaagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatagttcacagggtcagcaggatttacaaggtaggttaagtcaagatggttaagagt 320
Query: 121 cttgcctgagctgctactgctacctttagtgttttaaagactcaacaaaaagcaattttc 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcgcctgagctgctactgctacctttagtgttttaaagactcaacaaaaagcaattttc 380
Query: 181 aagtatatggtataatctatgaacccaaggccattttatgtattaaaaatgatactaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtatatggtataatctatgaacccaaggccattttatgtattaaaaatgatactaaat 440
Query: 241 gatattatagcaacatgtgctctattatgatgcaacgcttaacatgattagtgactttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatattatagcaacatgtgctctattatgatgcaacgcttaacatgattagtgactttat 500
Query: 301 aattaatcactggtttagcaatttcagcttctaatcacagatgagaaggctagcctattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaatcactggtttagcaatttcagcttctaatcacagatgagaaggctagcctattt 560
Query: 361 tcaactctttttggattaagaatttttttaatgattcatttattttatatatgtgagttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaactctttttggattaagaatttttttaatgattcatttattttatatatgtgagttc 620
Query: 421 actgttgctgtcttcagacataccagaagaggacaatgaatcccactgtatatcattgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgttgctgtcttcagacataccagaagaggacaatgaatcccactgtatatcattgta 680
Query: 481 agccacaagtggttgctgggaattgaactctggacctctggaagagcatct 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agccacaagtggttgctgggaattgaactctggacctctggaagagcatct 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
