BAC Information

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BAC

Clone NameMSMg01-524N16
Chromosome5 (Build37)
Map Location 133,684,265 - 133,901,013
singlet/doubletdoublet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524N16.T7 (MSMg01no524_n16.b1)MSMg01-524N16.TJ (MSMg01no524_n16.g1)
ACCAG594833AG594834
length782778
length of high quality
(start - end)		634 (37 - 670)601 (68 - 668)
definitionCHROMAT_FILE: MSMg01no524_n16.b1 PHD_FILE: MSMg01no524_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:15 2005CHROMAT_FILE: MSMg01no524_n16.g1 PHD_FILE: MSMg01no524_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,900,689 - 133,901,013)(133,684,265 - 133,684,865)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTT
GCCCCTTAAAGCTAACCTGAAATTGTAAAACTTCTGAAAAAGCCAGTTGT
GGAAAATGTTTCAGCTGCACTATGCACATGTTCTTAGGTGAATTAGCCAC
TTTCCCCCTAATTTTTATTATATATTTTCTTCATTTACATTTCAAATGCT
ATCCCAAAAGTCCCTTATACCCTTATGCCCTGCTCCCCTACCCACCCACT
CCCATTTCTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGC
AAGGCCAAGGGGCCTCTCTTCACAATGATCGCCAACTGGGCCATCTTCTG
CTACATATGCAGCTAGAGACATGAGCTCTGGGGGTACAGGTTAGTTCATA
TTGTTGTTCCAACTATAGGGTTGCAGACCCCTTCAACTTCTTAGGTACTT
TCTCTAGCTCCTCCATTAGGGGCCTGTGTTCCATCCAATAGATGACTGTG
AGCATCCACTTCTGTATTTGCCAGGCACTGGCCTCAAACAAGTCAGCTAT
ATCAGGGACCTTTCAGCAAACTCTTGCTGGCATATGCAATAGTGTCTGTG
TTTGGTGGCTGATTATGGGATGGATCCCTGGGTGGGGCAGTCTCTGGATG
GTCCATCCTTTCATCTCAGCTCCAAACTTTGTCTCTGTAACTCTTCCCAT
GGGCATTTTATTCCCTATTCTAAGAANGAATGAAGNATCCATGGATTGGG
CCTCCTCTTCTTGATTTTCTGTGTTTTGCAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAGCTGCTCATATTCTATTCTGAACTCTAGCT
ATTCTTTCATCTAACTATAATAAAGACCATTCTCGAGCCGAAGGGAATCT
ACACAGCATCAAGAGAGATGCTCAGAATGTGGCTGTCTAGGAAACAAGTA
GAGACTGAAGATTTGCAGCCTGATGTTTACATCCTCCACTGATGCCATGT
GATTGACTGATCCTAGACAAAACATTAGTAACCAGTGTAGAAGCCACCAT
CAATCTGATACAGCTCTTCTGGAAAGTTCTTATGTGTTCAACATGGCTTC
TTAAAGAAAGCTCATGTGCTTGTTCTACTGAATAAGGAAATACTATCCTC
CCCGCCCCCCAGATGAACTTATTCATGATTGCAAATTGAAAGGAATAGGT
GGAAGATAGCTGACTTTACCCTGAAGTGAGCTTATCTTTGTGACACCATT
CTGTGAGATCTAGAAATAGAAGAAGCACCTGCTCTTTGTTCTTCAAAGCA
TCGCTGTAGAAGGCATTTATCTCCCCACAAAACATGGATGAGACTTCACC
TATCTATTGCCACTCTGTCTTTGGAGACAGATCTTACAAAAACTGGCTGA
GGATTATCAATTTTCCTGATACAACAAAGTAAGGCTTGTAACAAAGCCTG
AGCTCTCCCGAGGACTGGTCAAGATGTCTATTTCTTGTTCTATGGCTTTG
TTTATCTGATCATTCGATGGGGTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_n16.b1 MSMg01no524_n16.b1 CHROMAT_FILE:
MSMg01no524_n16.b1 PHD_FILE: MSMg01no524_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:15 2005
         (634 letters)



>mm_chr5_133900689_133901722
          Length = 1034

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgccccttaaagctaacctgaaattgtaaaacttctgaaaaagccagttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattcttttgccccttaaagctaacctgaaattgtaaaacttctgaaaaagccagttgt 266

                                                                       
Query: 65  ggaaaatgtttcagctgcactatgcacatgttcttaggtgaattagccactttcccccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaaaatgtttcagctgcactatgcacatgttcttaggtgaattagccactttcccccta 206

                                                                       
Query: 125 atttttattatatattttcttcatttacatttcaaatgctatcccaaaagtcccttatac 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 atttttattatatattttcttcatttatatttcaaatgctatcccaaaagtcccttatac 146

                                                                       
Query: 185 ccttatgccctgctcccctacccacccactcccatttcttggccctggtattcccctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ccttatgccctgctcccctacccacccactcccatttcttggccctggtattcccctgta 86

                                                                       
Query: 245 ctggggcatataaagtttgcaaggccaaggggcctctcttcacaatgatcgccaactggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  ctggggcatataaagtttgcaaggccaaggggcctctcttcacaatgatcgccaactggg 26

                                    
Query: 305 ccatcttctgctacatatgcagcta 329
           |||||||||||||||||||||||||
Sbjct: 25  ccatcttctgctacatatgcagcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_n16.g1 MSMg01no524_n16.g1 CHROMAT_FILE:
MSMg01no524_n16.g1 PHD_FILE: MSMg01no524_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:15 2005
         (601 letters)



>mm_chr5_133684065_133685065
          Length = 1001

 Score = 1154 bits (597), Expect = 0.0
 Identities = 600/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagctgctcatattctattctgaactctagctattctttcatctaactataataaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagctgctcatattctattctgaactctagctattctttcatctaactataataaagac 260

                                                                       
Query: 61  cattctcgagccgaagggaatctacacagcatcaagagagatgctcagaatgtggctgtc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattcttgagccgaagggaatctacacagcatcaagagagatgctcagaatgtggctgtc 320

                                                                       
Query: 121 taggaaacaagtagagactgaagatttgcagcctgatgtttacatcctccactgatgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggaaacaagtagagactgaagatttgcagcctgatgtttacatcctccactgatgcca 380

                                                                       
Query: 181 tgtgattgactgatcctagacaaaacattagtaaccagtgtagaagccaccatcaatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgattgactgatcctagacaaaacattagtaaccagtgtagaagccaccatcaatctg 440

                                                                       
Query: 241 atacagctcttctggaaagttcttatgtgttcaacatggcttcttaaagaaagctcatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacagctcttctggaaagttcttatgtgttcaacatggcttcttaaagaaagctcatgt 500

                                                                       
Query: 301 gcttgttctactgaataaggaaatactatcctccccgccccccagatgaacttattcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttgttctactgaataaggaaatactatcctccccgccccccagatgaacttattcatg 560

                                                                       
Query: 361 attgcaaattgaaaggaataggtggaagatagctgactttaccctgaagtgagcttatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgcaaattgaaaggaataggtggaagatagctgactttaccctgaagtgagcttatct 620

                                                                       
Query: 421 ttgtgacaccattctgtgagatctagaaatagaagaagcacctgctctttgttcttcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtgacaccattctgtgagatctagaaatagaagaagcacctgctctttgttcttcaaa 680

                                                                       
Query: 481 gcatcgctgtagaaggcatttatctccccacaaaacatggatgagacttcacctatctat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcatcgctgtagaaggcatttatctccccacaaaacatggatgagacttcacctatctat 740

                                                                       
Query: 541 tgccactctgtctttggagacagatcttacaaaaactggctgaggattatcaattttcct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgccactctgtctttggagacagatcttacaaaaactggctgaggattatcaattttcct 800

            
Query: 601 g 601
           |
Sbjct: 801 g 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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