Query= MSMg01no524_p23.b1 MSMg01no524_p23.b1 CHROMAT_FILE:
MSMg01no524_p23.b1 PHD_FILE: MSMg01no524_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:27 2005
(472 letters)
>mm_chr5_15896438_15897309
Length = 872
Score = 808 bits (418), Expect = 0.0
Identities = 430/434 (99%)
Strand = Plus / Minus
Query: 39 tttttttttttttttttttttttttttgggttttggaggcagggtttctttgtgtaaccc 98
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 842 tttttttttttttttttttttttttttggttttttgaggcagggtttctttgtgtagccc 783
Query: 99 tggctgtcctggaactcactttgtagaccaggctgacctcgaactcagaaatccacctgc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tggctgtcctggaactcactttgtagaccaggctgacctcgaactcagaaatccacctgc 723
Query: 159 ctctgcctcccaagtgctgggattaaaggcatgcgcgaccacgcccggcttttgatgaaa 218
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 722 ctctgcctcccaagtgctgggattaaaggcatgcgccaccacgcccggcttttgatgaaa 663
Query: 219 tttttaatgaggctaaacattgagaatgtggcaggtaaaaactgtcacatttcatgctac 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tttttaatgaggctaaacattgagaatgtggcaggtaaaaactgtcacatttcatgctac 603
Query: 279 tacttttgtcttgctagatgcataaagacattattaaatgaggaaaaattatgacttcat 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tacttttgtcttgctagatgcataaagacattattaaatgaggaaaaattatgacttcat 543
Query: 339 tgataaaagcaaagtagttctttctttaaaatcattgtttcccaattaagctaaataggt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgataaaagcaaagtagttctttctttaaaatcattgtttcccaattaagctaaataggt 483
Query: 399 cacaaattgttaattatttctcatgcatcaagaaaaaacatcctaacataaaaaaatgaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacaaattgttaattatttctcatgcatcaagaaaaaacatcctaacataaaaaaatgaa 423
Query: 459 gtgtgacttaaagt 472
||||||||||||||
Sbjct: 422 gtgtgacttaaagt 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_p23.g1 MSMg01no524_p23.g1 CHROMAT_FILE:
MSMg01no524_p23.g1 PHD_FILE: MSMg01no524_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:27 2005
(586 letters)
>mm_chr5_15833675_15834660
Length = 986
Score = 980 bits (507), Expect = 0.0
Identities = 568/589 (96%), Gaps = 4/589 (0%)
Strand = Plus / Plus
Query: 1 attaagccttgttctttaatggaagtatccattaagaatactgatattggtaatttgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attaagccttgttctttaatggaagtatccattaagaatactgatattggtaatttgaca 258
Query: 61 ttcctttcagaaattatttttaaaacaaggatccctttggtgaacagatttttttcctac 120
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 tttctttcagaaattatttttaaaacaaggatccctccggtgaacagatttttttcctac 318
Query: 121 attaaaaagctatatttgtttaaaaaaaa--cctatattattacattagagagaaggctg 178
|||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 319 attaaaaaactatattcgtttaaaaaaaaaacctatattattacattagagaaaaggctg 378
Query: 179 gacaatttgaaaacacttgttgctcaattgtgaaatctggagttcatattccaggcacct 238
| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 379 ggcaatttaaaaacacttgttgctcaattgtgaaatctggagttcatattccagccacct 438
Query: 239 ttgttgccaggctctgaaatgacc-gtaactcagattccaggagctctattgctctcttt 297
||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct: 439 ttgttgccaggctctgaaatg-cctgtaactcagattccaggagctctatcgctctcttc 497
Query: 298 caactatgcaggcacctgcacacacaaacatataaatgctcacacagaagcatatgcaca 357
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 498 caactatgcaggcacctgcacacacaaacagataaatgctcacacagaggcatatgcaca 557
Query: 358 catgcacacacatacataccacactcacaatgagacacatgcatacacacacacactcac 417
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 catacacacacatacataccacactcacaatgagacacatgcatacacacacacactcac 617
Query: 418 acatacacaaatacctgtaaaataaaaacctttaaacactatattcttaaaactatgttt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acatacacaaatacctgtaaaataaaaacctttaaacactatattcttaaaactatgttt 677
Query: 478 agtataaaatacactttattgttataagaatgtttctttaggccagggttgtggtaatat 537
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agtgtaaaatacactttattgttataagaatgtttctttaggccagggttgtggtaatat 737
Query: 538 ttaacttaagtaattttacaagatacattgcattatttgtgtactgaga 586
||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 738 ttaacttaagtaattttacgagatacattgtattatttgtgtactgaga 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
