XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TCAGCTAATATCCTTGTGGCAGCAGTCATTGGAGAGCAGGGATAGATATT
CATGGCACTATGCTAGTTTAACTTAAGGGAGTTGAGAGATTAAAAAAATT
AAGAGTCTTGAAGCAAGAGAGGCATTTCAGACCACATGTGGTTATCTGAC
TCTTGATTAAGTACATGGAAACACAGGAAAGAAGAAAAACCCCAAGAGAT
ATGCTGAGATATTTGAGGTTTTTAGAAATCTATATAATCATAATCATATT
GTAAGTTAGAATTTGCAAAAACAGAAATGAGTCTCAAACATTTAACTATG
TAAGCATTTTGTGTTTTGACATGTGTGCCTTAAGTCTAAATAAAACACTA
TTGCGCTTATTTATGTTCTACAGAGAAATTTTGGTCTTTGTGCCCTTTTA
GATAAGGATAACTGTTCCTCTGTTTTTAGGTGCTTTGATCTTACAATCCT
TGTAATTATATGCACAATCTCTTCCCCTATTTGCAATATATTGAAGCTCT
TGTGAATTTATTTGAAATTTTTGAAATCTAAAAATGGAGTAGTCCTCTTT
AAATCTCACACATTCCTTATTTCTGTTGCATGGTTTTATAGACAACCACT
AGCTTCTTGTCACTTTTAAATGATTACTTTATTTAAAACTGAACCTAATG
GCTTTTGGTCGAACCAAAATGTCGCTCACTGAAGCTGGTGACATTAAGTC
ATATTGCTTTCA

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGTCACTTTCGAAGATGAATTAATGCCAA
TATTTCTCAAATTATTCCATACAATTGAAACAGAAATGTAACATTTACCA
ATTCATTTTATGAAGTTAAGGTTACACGATACCTAAAAAAGCAAGTAAGA
AAGAAACTTATGGACATAGATACAAAAATATCTGGATAAAATGCTTGCAA
ATTTAGTCCAAGAATGCATAAATTATCACCAAGTCAGTTCATTCAAGAAA
TGAAGAGCTCAAAATACATTAGTTGATATATGTAATAAACATATTCAAAG
AAAAAAATCACACTGTTATCTTGTTCAATACAAAGTCCTTTGACAATAAT
CCAATACCTCTTCATGGCAAGATACTTCAAGAAACTATGGATATGAGGAA
TATTTCTCAAAATAATAGAGATAATTAGCAGCAAACATATAGGCAATACC
AAACTAAATGTAGGCAATTTCAAGGAATTTTCACTAAAATCATGAATAAG
ACAAGATTGGGAATGACATGTCTTTTATCACTCTGACGGTAATATAGACA
CATCCTTAGTATATACCTTAAATTCCAAACAATGATGAGAAAGTTAGTCT
GTAGAAGGAAGCATCCATGTTTGAAAGTAATATCTAGTTGAGGGATGGAC
AAAGTGATTAATCACCAAAGATTTGAAAAAGTGTGTTGTAGACAGCATAC
ACAAAACTCCCTTCC

Query= MSMg01no525_p24.b1 MSMg01no525_p24.b1 CHROMAT_FILE:
MSMg01no525_p24.b1 PHD_FILE: MSMg01no525_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:48 2005
         (590 letters)



>mm_chr5_48160327_48161317
          Length = 991

 Score = 1081 bits (559), Expect = 0.0
 Identities = 580/587 (98%), Gaps = 1/587 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatcagctaatatccttgtggcagcagtcattggagagcagggatagatattca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaattctatcagctaaaatccttgtggcagcagtcattggagagcagggatagatattca 732

                                                                       
Query: 65  tggcactatgctagtttaacttaagggagttgagagatt-aaaaaaattaagagtcttga 123
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 731 tggcactatgctagtttaacttaagggagttgagagattaaaaaaaattaagagtcttga 672

                                                                       
Query: 124 agcaagagaggcatttcagaccacatgtggttatctgactcttgattaagtacatggaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agcaagagaggcatttcagaccacatgtggttatctgactcttgattaagtacatggaaa 612

                                                                       
Query: 184 cacaggaaagaagaaaaaccccaagagatatgctgagatatttgaggtttttagaaatct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacaggaaagaagaaaaaccccaagagatatgctgagatatttgaggtttttagaaatct 552

                                                                       
Query: 244 atataatcataatcatattgtaagttagaatttgcaaaaacagaaatgagtctcaaacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atataatcataatcatattgtaagttagaatttgcaaaaacagaaatgagtctcaaacat 492

                                                                       
Query: 304 ttaactatgtaagcattttgtgttttgacatgtgtgccttaagtctaaataaaacactat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttaactatgtaagcattttgtgttttgacatgtgtgccttaagtctaaataaaacactat 432

                                                                       
Query: 364 tgcgcttatttatgttctacagagaaattttggtctttgtgcccttttagataaggataa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgcgcttatttatgttctacagagaaattttggtctttgtgcccttttagataaggataa 372

                                                                       
Query: 424 ctgttcctctgtttttaggtgctttgatcttacaatccttgtaattatatgcacaatctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctgttcctctgtttttaggtgctttgatcttacaatccttgtaattatatgcacaatctc 312

                                                                       
Query: 484 ttcccctatttgcaatatattgaagctcttgtgaatttatttgaaatttttgaaatctaa 543
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 311 ttcccctatttgcaatatattgaagctcttgtgaatttaattgaaatttttgaaatctag 252

                                                          
Query: 544 aaatggagtagtcctctttaaatctcacacattccttatttctgttg 590
           |||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct: 251 aaatggagtagtccgctttaaatctcacacattctttacttctgttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space:   568980
Effective search space used:   568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)