BAC Information

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BAC

Clone NameMSMg01-526B07
Chromosome5 (Build37)
Map Location 115,891,991 - 115,892,433
singlet/doubletsinglet
Overlap geneMsi1
Upstream geneMmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
Downstream genePla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526B07.T7 (MSMg01no526_b07.b1)MSMg01-526B07.TJ (MSMg01no526_b07.g1)
ACCAG595761AG595762
length761745
length of high quality
(start - end)
322 (39 - 360)588 (68 - 655)
definitionCHROMAT_FILE: MSMg01no526_b07.b1 PHD_FILE: MSMg01no526_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:54 2005CHROMAT_FILE: MSMg01no526_b07.g1 PHD_FILE: MSMg01no526_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
CAATCTCTATACTTGCCTTTGGACAAGATGTTCTGTAATATGTTATCTTG
ACCATAAAAAAAAATCAATTTTTTTTGTTTTGTTTTTTTGAGACAGGGTT
TTTCTGTGTAGCCCGAGCTGTCCTGGAACTCACTCCATAGACCAGGCTGG
CCTCAAACTCAGAAATCTGCCTACCTCTGCCTCCCAAGTGCTGGGATTAA
AGGCATGCGCCACCACTGCCTGGCTTCAGTTTAAAAATTTTTTTAAAGGC
CCTGTGTAGTGATACAGGCCTTTAATCCCACCTACCAGGAAGATCAAAAT
TTCAAAGCCTGCATCTAGGTGACAAAGTGAGTTCAAGGCCTTGCCAACTT
AGTGAAATGCTATCTCAACATAAAATATAACAGCTGGCAAGGTGGCTCAT
TACGTCACAGTGCTTTAGTTGCAAGCCTGAGGATGTGAGTTCAATTCCCA
GGGCCATGGAGAACTGACCCCTGAAAGTCAACTCCTGACCCCCACACATG
AATCATGGCATGTGCTCGCCTACGTGTGAGAACACGCCCGCATGCCACAC
CCCACATCCAAAAAACACAATCTACTCAAACATTAACCTAACACTCTTGA
TAGGGAAATATCCTCCAACCTTGTGGAGGCACCCCCCCTTTTTTGGTCTC
AACAACTCTCCCCCAATTTCATAGAAATCAACATCCGATCCTTACAAACC
AAACTACCGAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTACACAGAGAAACCCTGT
CTCGAAAAACCAAGAAAAACAAAAAGAAAAAAGAAAAACAAAACAAAACA
AACAAACAAACAAACCAAAAAAAAAAGACCTCTGGAAGAGCAGTCAGTGC
TCTTAACTACTGAGTCATCTCTCCTGCCCCCTTCTTTTAATTAAAAAATA
TTTTTATGCAATGTGCACAATGCCATGCAGAATAGGAGCCAGATCCTCTA
GAACTAAGGTTGCAGGTTGTTCTGAGGTGCCATGTGGGTGCTGGGGAATT
GAACCTGGGTCCTTCAAAAGACCAGCTAGTGTTCTTAACCACTGAGCCAT
CGTCCCAGTCCCTTGGGTGCTTTTCAAAGCACAGCTGACTCTTAGCTGAT
TTCAAGGCTCATGGCTAGTCCCATCACCTACTCCAGGGAGCCTCCCGTGG
TTGTTTAGGTGGCTCCTTGGACCTCCATGGCCCCGAATCCCTCTATAGAA
GACACTCCTGTCTTTCAGGTGAACCACAGCCCAGTGACAGCAGATCCTAC
CCCTCACACAAAACACAACAAAGACAACAATAACAACACGAGAATTAGCT
GCGTGAGACAACCAAGCCTTCCTCAAGCCTCTGGACCTCTGTCAATGCTA
CTCTCCCTGTCTGGTACGCTTCTCCCTTCTTCCCCACGACTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_b07.g1 MSMg01no526_b07.g1 CHROMAT_FILE:
MSMg01no526_b07.g1 PHD_FILE: MSMg01no526_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:54 2005
         (588 letters)



>mm_chr5_115891446_115892433
          Length = 988

 Score =  857 bits (443), Expect = 0.0
 Identities = 443/443 (100%)
 Strand = Plus / Minus

                                                                       
Query: 146 agtcatctctcctgcccccttcttttaattaaaaaatatttttatgcaatgtgcacaatg 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 agtcatctctcctgcccccttcttttaattaaaaaatatttttatgcaatgtgcacaatg 929

                                                                       
Query: 206 ccatgcagaataggagccagatcctctagaactaaggttgcaggttgttctgaggtgcca 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 ccatgcagaataggagccagatcctctagaactaaggttgcaggttgttctgaggtgcca 869

                                                                       
Query: 266 tgtgggtgctggggaattgaacctgggtccttcaaaagaccagctagtgttcttaaccac 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tgtgggtgctggggaattgaacctgggtccttcaaaagaccagctagtgttcttaaccac 809

                                                                       
Query: 326 tgagccatcgtcccagtcccttgggtgcttttcaaagcacagctgactcttagctgattt 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgagccatcgtcccagtcccttgggtgcttttcaaagcacagctgactcttagctgattt 749

                                                                       
Query: 386 caaggctcatggctagtcccatcacctactccagggagcctcccgtggttgtttaggtgg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 caaggctcatggctagtcccatcacctactccagggagcctcccgtggttgtttaggtgg 689

                                                                       
Query: 446 ctccttggacctccatggccccgaatccctctatagaagacactcctgtctttcaggtga 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ctccttggacctccatggccccgaatccctctatagaagacactcctgtctttcaggtga 629

                                                                       
Query: 506 accacagcccagtgacagcagatcctacccctcacacaaaacacaacaaagacaacaata 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 accacagcccagtgacagcagatcctacccctcacacaaaacacaacaaagacaacaata 569

                                  
Query: 566 acaacacgagaattagctgcgtg 588
           |||||||||||||||||||||||
Sbjct: 568 acaacacgagaattagctgcgtg 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)