BAC Information

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BAC

Clone NameMSMg01-526C23
Chromosome5 (Build37)
Map Location 139,015,086 - 139,015,441
singlet/doubletsinglet
Overlap genenone
Upstream geneTrfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik
Downstream geneZfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526C23.T7 (MSMg01no526_c23.b1)MSMg01-526C23.TJ (MSMg01no526_c23.g1)
ACCAG595840AG595841
length738739
length of high quality
(start - end)		590 (36 - 625)518 (66 - 583)
definitionCHROMAT_FILE: MSMg01no526_c23.b1 PHD_FILE: MSMg01no526_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:01 2005CHROMAT_FILE: MSMg01no526_c23.g1 PHD_FILE: MSMg01no526_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAG
TCTGTTCACATAGGAGTTAGATGGTCTGATAGGACTTGTTCATAATTGTC
CTCATTATAGTTTCCCTGAATTCAGGGAAATTAAGTTTCATTGTTGACAG
TAGTACTAACATGAGCTCCTATTTCTGATCCACTGTAGAGATGTTGCTGT
GAGTTTTTGGCTGCACCGCTTTGTGCTCCCAGTGGATCTCAAGCATGCAC
CCAAGACCTATCTCGGATCCTCAAATGGTTAAATATTAAAATGCCTTCAC
CAGTTCAAAGGTTGGGCACTCCTAAACCTTCCCATGCTACCCCAGGTCCA
GTGGGGATGTGGCCAGTGTCCCCTTACCCAAAAACTCACATGGCTGGTTG
GCTTAATCTCCTGCTGCTACTGAATTCCCTTCTTCTCCCATCCAGGAGAT
TCTCTCTCCATCCTCCCCTCACAACTCTAAGTGTCCCACCCATGTCCAGC
CATTGGCCACTGGCATCTTTATTGATAGACCAACAACCAATCAGAGACAA
GGATTTTCAACATCTGAACTCACAGATTCAAATCCATTAGCACAAATCTC
CAACACAGAGATGAAGTTGATCAAGCAACCCAACTACATCCTGGTGTAGC
AGGTCTCCAGACCGTAGTACAACTGATTCCATGATGGCAGTTCCATTCAG
GCCATAAAGCTCAACATATACACAGAACCGCCCACCCC

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGCACTAAACCCATCTGATCCTGGGCTTATTTTTG
GTTTGGGGACTTTTAGTGACTTCTATTTCAATTTGGGTTATAGGACTGTT
TAGGTGGATTATCTGATCCTGATTTAACTTTGGTACTTGGTATCTGTTTA
GAAATTTGCCCATTTCATCCAGATATTCCAGTTTTGCTGAGTATAGGCTT
TTGTAGTAGGATCTAATGCTTTTTTTTTTTTTTGGATTTTCTCAGTTTCT
GTTGTTCTCTTTTCATTTCTAATTGTATTCATTTGGAAACTGCCTCTGTG
CCCTATGGTTAGTCTGGCTAAAGGTTTATCTATCTTGGTGATTTTCTCGA
TTAACCAGGTCCTGGTTTGGTTGGTTCTTTGTATAGTTCTTTTTGTTTCT
ACTTGGTTAATTTCAGCCCTGAGTTTGACTACTGCCTCCTACTCCTCTTG
GGTGTATTTGCTTCTTTTTGTTCTAGAGCTTTCAGGTGCTATTAAGATGC
TAGTGTATGCTCTCCCCAGTTTCATTTTGGAGGCACTCAGAGCTATGAGT
TTTCCTCTTAACACTGCTTTCATTGTGTCCCATAAGTTTGGCTATGTTCT
GCCTTCATTTTCATTAAATTTTAAAGGCCTTAATTTCCTTATTTCCTCCT
TGGACAAGTTATCACTGAGGAGGCTATTTATTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_c23.b1 MSMg01no526_c23.b1 CHROMAT_FILE:
MSMg01no526_c23.b1 PHD_FILE: MSMg01no526_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:01 2005
         (590 letters)



>mm_chr5_139015086_139016075
          Length = 990

 Score =  586 bits (303), Expect = e-171
 Identities = 340/357 (95%), Gaps = 10/357 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccagtctgttcacataggagttagatggtctgataggacttgttcataattg 63
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggaattctccagtctggagacataggagttagatggtctgataggacttgttcataattg 297

                                                                       
Query: 64  tcctcattatagtttccctgaattcagggaaattaagtttcattgttgacagtagtacta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcctcattatagtttccctgaattcagggaaattaagtttcattgttgacagtagtacta 237

                                                                       
Query: 124 acatgagctcctatttctgatccactgtagagatgttgctgtgagtttttggctgcaccg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 236 acatgagctcctatttctgatccactgtagagatgttgctgtgagtttttggctgcactg 177

                                                                       
Query: 184 ctttgtgctcccagtggatc----t-----caagcatgcacccaagacctatctcggatc 234
           |||||||| |||||||||||    |     ||||||||||||||||||||||||||||||
Sbjct: 176 ctttgtgcacccagtggatcagaatgcacccaagcatgcacccaagacctatctcggatc 117

                                                                       
Query: 235 ctcaaatggttaaatattaaaatgccttcaccagttcaaaggttgggcactcctaaacct 294
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ctcaaatggttaa-tattaaaatgccttcaccagttcaaaggttgggcactcctaaacct 58

                                                                    
Query: 295 tcccatgctaccccaggtccagtggggatgtggccagtgtccccttacccaaaaact 351
           |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  tcccctgctactccaggtccagtggggatgtggccagtgtccccttacccaaaaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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