BAC Information

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BAC

Clone NameMSMg01-526E02
Chromosome5 (Build37)
Map Location 124,541,272 - 124,541,600
singlet/doubletsinglet
Overlap geneAbcb9
Upstream geneBC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b
Downstream geneOgfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526E02.T7 (MSMg01no526_e02.b1)MSMg01-526E02.TJ (MSMg01no526_e02.g1)
ACCAG595894AG595895
length741736
length of high quality
(start - end)		655 (35 - 689)579 (66 - 644)
definitionCHROMAT_FILE: MSMg01no526_e02.b1 PHD_FILE: MSMg01no526_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:07 2005CHROMAT_FILE: MSMg01no526_e02.g1 PHD_FILE: MSMg01no526_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGCC
TCGCTCCCTCAGCTCTTCCGAGTCTTCTTTGCATGTCTCCTCTCCTTCTA
TCCCCCTTTTTTTGTTTCACAGGCTTCATTCTTAGCATCAGGACCAGTCC
TCTCTTTCTTTTTCTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACAC
TCCAGAAGAGGGAGTCACATCTCATTACAGATGGTTGTGAGCCACCATGT
GGTTGCTGGGGTATGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTT
ACCCGCTGAGCCACCTCTCTATCCCCTCTCTTTTAAGATTGCTTTTTATT
TTATGTGTCTGAATTTCTTGCCTACCTGGATACCTGGATGTGTGCACACC
ACATGCATTCAGTGGCCAAGAGGGCCACAGGAGGATGTCAAAGCCCCTGG
AATTGACATTATAGAGTGTTTAGTTACCGTGTGGGTATTGGGAATCAAAG
CTGGGTCCTTTGGGAGAGCGGCTGGTGCCCTTAACCATTGAGTTGTTTGC
CCAGCCCCATCAGCCCCTTTTGAATCTCCCTCCTGTAGAGGGAGGCCATC
TTTATAGGAGCAGAGATCTTTGTGTTCTATGCTCACTGGTTCTTGTTTCT
CTTTGTTGTCTGCTGCTGCCGCTGTGTGTGTTTTGATAACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAAACCCCACCTATAATTTCTTCAGCCCAACTATT
GGCTGTTGACATCTTTACTTACCAATCAGAAATAATTTGAGGGCAGGGTC
ACATAGATCTATGTGCAGGGTCACATAGGATCTATGTGCAGGGTCACTTG
GGTCACATGCAGACTCCTGTTCTTGCAGGTTCACACTTAGCACTACACTA
GACAACAAGACCAAACCCCAACACTATCTGATGTTTTGTTTTGTGGTTTT
GATTTGTTTGAGAGAGAGAGAAAGAGAGAAAACAAATATAAAATTTATAA
AATTTGAGAGGTGCTGGGGTAAGGTGAATTCCCATTTAAAAATATATTCT
TGGGCTGGAGAGATTGGCTCAGCAGTTAAGAGCACTGACTGTTCTTCCAG
AGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCTTCTA
TAATGGAATCCACCCCCCCTCTTCTGGTGTATCTGAAGACAGCAACAGTG
TACTCACATAAATAAAATAAATAAATCTTTTAAAAAATATATATATATAT
CGAAAAAATTTTTAAAAAGCCGGGCATGGTGGCGCACACCTTTAATCCCA
CACTTGAGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGTCTGGT
CTACAGAGTGATTTCCAGACAGTCTGAGCTATACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_e02.b1 MSMg01no526_e02.b1 CHROMAT_FILE:
MSMg01no526_e02.b1 PHD_FILE: MSMg01no526_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:07 2005
         (655 letters)



>mm_chr5_124541272_124542325
          Length = 1054

 Score =  495 bits (256), Expect = e-144
 Identities = 319/358 (89%), Gaps = 29/358 (8%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggcctcgctccctcagctcttccgagtcttctttgcatgtctcctctccttc 64
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 329 gaattccaggcctcgctccctcagctcttccgagtcttcttcgcatgtctcctccccttc 270

                                                                       
Query: 65  tatccccctttttttgtttcacaggcttcattcttagcatcaggaccagtcctctctttc 124
           |||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tatccccc-tttctcatttcacaggcttcattcttagcatcaggaccagtcctctctttc 211

                                                                       
Query: 125 tttttcttatttatttatttatttatttatttatttatttatttatttatttatttatta 184
           ||||||                            ||||||||||||||||||||||||||
Sbjct: 210 tttttc----------------------------ttatttatttatttatttatttatta 179

                                                                       
Query: 185 tatgtaagtacactgtagctgtcttcagacactccagaagagggagtcacatctcattac 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 178 tatgtaagtacactgtagctgtcttcagactctccagaagagggagtcacatctcattac 119

                                                                       
Query: 245 agatggttgtgagccaccatgtggttgctggggtatgaactcaggacctttggaagagca 304
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 118 ggatggttgtgagccaccatgtggttgctggggtttgaactcaggacctttggaagagca 59

                                                                     
Query: 305 gtcagtgctcttacccgctgagccacctctctatcccctctcttttaagattgctttt 362
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  gtcagtgctcttacccattgagccacctctctatcccctctcttttaagattgctttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space:   673380
Effective search space used:   673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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