Query= MSMg01no526_e11.b1 MSMg01no526_e11.b1 CHROMAT_FILE:
MSMg01no526_e11.b1 PHD_FILE: MSMg01no526_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:09 2005
(496 letters)
>mm_chr5_145428368_145429263
Length = 896
Score = 592 bits (306), Expect = e-173
Identities = 321/328 (97%), Gaps = 4/328 (1%)
Strand = Plus / Minus
Query: 5 gaattcagctttatgcttaatttactctctattgattttcatcaatgtgatttaagctat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaattcagctttatgtttaatttactctctattgattttcatcaatgtgatttaagctat 265
Query: 65 tacctccaagctaattcttagttaaaaaggagaagttatacaaaggcctggagtccagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacctccaagctaattcttagttaaaaaggagaagttatacaaaggcctggagtccagaa 205
Query: 125 cagtgggagacgccttgcctcacatgtacaaggcgctgtgttccgtccccagcaccacac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cagtgggagacgccttgcctcacatgtacaaggcgctgtgttccgtccccagcaccacac 145
Query: 185 acacaaacaaacacacacacaaacaaacaaacagacaaacaagcaaacacctgaagactg 244
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 144 acacaaacaaacacatacacaaacaaaca----gacaaacaagcaaacacctgaagactg 89
Query: 245 atttggggctcagcagttaagagcttgtactcttcttacagaggacccaagttcagtttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atttggggctcagcagttaagagcttgtactcttcttacagaggacccaagttcagtttc 29
Query: 305 catcaggtttttacatacttggctgtaa 332
||||||||||| ||||||||||||||||
Sbjct: 28 catcaggttttcacatacttggctgtaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_e11.g1 MSMg01no526_e11.g1 CHROMAT_FILE:
MSMg01no526_e11.g1 PHD_FILE: MSMg01no526_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:09 2005
(532 letters)
>mm_chr5_145303537_145304468
Length = 932
Score = 990 bits (512), Expect = 0.0
Identities = 527/532 (99%)
Strand = Plus / Plus
Query: 1 cgtgctattgagcacacgcccccactcttgacttcccaagtggctaagaggggaggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtgctattgagcacacgcccccactcttgacttcccaagtggctaagaggggaggaaat 260
Query: 61 gcagaagagggggagggggaaactgtataagataggttcttctgacaccgtggtggaaat 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gcagaagagggggagggggaaactgtataagataggttcttctgacatcgtggtggaaat 320
Query: 121 tagcacatttcccagaagaccaagataaaaatgcatgtgagaaagaaccagggagccaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcacatttcccagaagaccaagataaaaatgcatgtgagaaagaaccagggagccaaa 380
Query: 181 cagatggggcaataaaatggaggtagaacagctcattaggattcccagcacgtgggcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagatggggcaataaaatggaggtagaacagctcattaggattcccagcacgtgggcttg 440
Query: 241 ggttaagtccgtaccgggctctgggctgccccgggaccagccaacatagtgaatgagtgg 300
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ggttaagtctgtacccggctctgggctgccccgggaccagccgacatagtgaatgagtgg 500
Query: 301 gtggttactatgctgttgcaccagttacactaagagattaggtggcagtgattcactgct 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggttactatgctgttgcaccggttacactaagagattaggtggcagtgattcactgct 560
Query: 361 gcagatctgcacgactttctcaagtagcagaaaaatctgtgggccctgggctctgtcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagatctgcacgactttctcaagtagcagaaaaatctgtgggccctgggctctgtcact 620
Query: 421 cgcacagcccttctcatgggtagggtgagtcatgcacgcaggatctttcaggtggacggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgcacagcccttctcatgggtagggtgagtcatgcacgcaggatctttcaggtggacggt 680
Query: 481 ttctgtgctgtgaggaagaaatcaaggcagagagcccacgctgccaggaaca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctgtgctgtgaggaagaaatcaaggcagagagcccacgctgccaggaaca 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
