TTCATTCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATAAACAATATTAGAATTTAAAAGGAAATGAAGA
TATTTGATTAAAAGAATGTAAAGGGATAAAATTGTATGATTTAATTCACT
CATGAATTAATTTATTATACAATCTTTCACTTTCTTAGTTATAATTTCCA
AAAATATTTTTTGAGGCTATGGAGAAAAATTTTTTTTTCTGTCTGCCATT
TGTATATAGAAAGACTACTGATTTTGTGTGTTAATTATGTCTCCTGTTAC
CTTAATGAATGTGTTTATCAGGTATGGTTTCCTGGTGGAAGTTTTGGGGT
TATTAATGTTTACCATCATATGACCCACAAATAAAGATATTCTGAAATCT
TCCCTTTGTGTTTGTATCCCTTTCAGTGTCTACTTCAGTTTTATTACTCT
TTAAGTGCTATATTCAACAGCTACAGGTAGATTTAGCAATCTTGACTTCT
TCCTGGTTTTAGTGCAAATGAGTTAAGTTTCTATCAACTTAGGTTGATAT
TGGATGTGTTCTTATTGTTAATTGGCTGCATTGTTTTGAGGCATGCACCT
TGTATCCCTAGTCTCCCCAAAAGGTATGATGAAAGGGTGTGGATTTTGTC
AAAGTCCTTTTCTTTTTTTTCTTTTTAAAGATTTATTTATTTATTTTACG
TATATTATGAGTACACTGAAGTTGTCTTCAAACAA

ATTAAGTATTCAATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTATATGAAGT
ATTTGGCTATGGGACAATGGACAGCTCCAGGAAACTTAGTAAGGTTGAGC
AGGACCATAATCCCTGGCACTCAGGCACCCATGTGAGACAATAAGCATTT
ACCTTCTCCCTACCAGATTCCTGGCCTAGATTACATGCCCCAAAAGTGAC
CTGGTTCTCCATGCTACTGAGGTATCTAGAGACACTGAGGGTTTAGTCAA
TCAGCTTCCCTTCTCAGATATTCCTCACTGCAAAGGTATCTCATCTCTGG
TCCACCATGGGAAGGCGGTATACACCCAGTTTTCCAAAATGAACAATTAA
TAAATACTTTGGAGCCAAAGACTGTCTCTTTCATCAAGAACTGCTGTGGG
AAGCATAGAGAAGGTCCTAGACTACCTAGCTGTCTTAGTCAGGGTTTCTA
TTCCTGGACAAACATCATGACCAAGAAGCAAGTTGGGGAGAAAAGGGTTT
ATTTGGCTTACACTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACT
GGAACTCAAACAGGTCAGAAAGCAGGAACTGAGGCAGAGGCCATGGAGGG
ATATTATTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTAT
AGAATCAAGATTACCAGCCCAGAGATAGTCCCC

Query= MSMg01no527_b06.b1 MSMg01no527_b06.b1 CHROMAT_FILE:
MSMg01no527_b06.b1 PHD_FILE: MSMg01no527_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:12 2005
         (670 letters)



>mm_chr5_80399179_80400248
          Length = 1070

 Score = 1266 bits (655), Expect = 0.0
 Identities = 664/667 (99%), Gaps = 1/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataaacaatattagaatttaaaaggaaatgaagatatttgattaaaagaatgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataaacaatattagaatttaaaaggaaatgaagatatttgattaaaagaatgta 264

                                                                       
Query: 65  aagggataaaattgtatgatttaattcactcatgaattaatttattatacaatctttcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggataaaattgtatgatttaattcactcatgaattaatttattatacaatctttcac 324

                                                                       
Query: 125 tttcttagttataatttccaaaaatattttttgaggctatggagaaaaatttttttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcttagttataatttccaaaaatattttttgaggctatggagaaaaatttttttttct 384

                                                                       
Query: 185 gtctgccatttgtatatagaaagactactgattttgtgtgttaattatgtctcctgttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtctgccatttgtatatagaaagactactgattttgtgtgttaattatgtctcctgttac 444

                                                                       
Query: 245 cttaatgaatgtgtttatcaggtatggtttcctggtggaagttttggggttattaatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaatgaatgtgtttatcaggtatggtttcctggtggaagttttggggttattaatgtt 504

                                                                       
Query: 305 taccatcatatgacccacaaataaagatattctgaaatcttccctttgtgtttgtatccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taccatcatatgacccacaaataaagatattctgaaatcttccctttgtgtttgtatccc 564

                                                                       
Query: 365 tttcagtgtctacttcagttttattactctttaagtgctatattcaacagctacaggtag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcagtgtctacttcagttttattactctttaagtgctatattcaacagctacaggtag 624

                                                                       
Query: 425 atttagcaatcttgacttcttcctggttttagtgcaaatgagttaagtttctatcaactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttagcaatcttgacttcttcctggttttagtgcaaatgagttaagtttctatcaactt 684

                                                                       
Query: 485 aggttgatattggatgtgttcttattgttaattggctgcattgttttgaggcatgcacct 544
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 685 aggttgatattggatgtgttcttattgttaattggctccattgttttgaggcatgcacct 744

                                                                       
Query: 545 tgtatccctagtctccccaaaaggtatgatgaaagggtgtggattttgtcaaagtccttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtatccctagtctccccaaaaggtatgatgaaagggtgtggattttgtcaaagtccttt 804

                                                                       
Query: 605 tctttttttt-ctttttaaagatttatttatttattttacgtatattatgagtacactga 663
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 805 tctttttttttctttttaaagatgtatttatttattttacgtatattatgagtacactga 864

                  
Query: 664 agttgtc 670
           |||||||
Sbjct: 865 agttgtc 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)