Query= MSMg01no527_f20.b1 MSMg01no527_f20.b1 CHROMAT_FILE:
MSMg01no527_f20.b1 PHD_FILE: MSMg01no527_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:34 2005
(529 letters)
>mm_chr5_93007345_93008272
Length = 928
Score = 977 bits (505), Expect = 0.0
Identities = 520/525 (99%), Gaps = 1/525 (0%)
Strand = Plus / Minus
Query: 5 gaattccttgggcatgagattaacagtgttcagagtcattactggattactcttagtctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaattccttgggcatgagattaacagtgttcagagtcattactggattactcttagtctt 669
Query: 65 gtttttaagtaataagcacttattaatataactagatgttatagtttcaatttaggaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtttttaagtaataagcacttattaatataactagatgttatagtttcaatttaggaaaa 609
Query: 125 acatcaaaaagtctgtctctaaaaatggatagtcactaacaattccaaatgatatctcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acatcaaaaagtctgtctctaaaaatggatagtcactaacaattccaaatgatatctcct 549
Query: 185 cttcgatacaaaccattattatagatattaaatattcattctcttatcaactatttatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cttcgatacaaaccattattatagatattaaatattcattctcttatcaactatttatta 489
Query: 245 tattaaatgtagtaacattctgggaggtctactttgaaaagccagagtcccagagaacca 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 488 tattaaatgtagtaacattctgggaagtctactttgaaaagccagagtcccagagaacca 429
Query: 305 gaattcaagaacgtttaaagctataagataaactcagtttcgttagatttttggttagtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaattcaagaacgtttaaagctataagataaactcagtttcgttagatttttggttagtt 369
Query: 365 ctcctgtggtcccctttgttttctggagtcgcccctcatggtctggtttatggtaccact 424
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 368 ctcctgtggccccctttgttttctggagt-gcccctcatggtctggtttatggtaccact 310
Query: 425 cttctcttcctcccatggcttactcagctatctccctttctcagctcattgtacctggtt 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cttctcttcctcccgtggcttactcagctatctccctttctcagctcattgtacctggtt 250
Query: 485 tagcctcagcctgagaagcgcatcacagctgcgtctagtctgata 529
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cagcctcagcctgagaagcgcatcacagctgcgtctagtctgata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_f20.g1 MSMg01no527_f20.g1 CHROMAT_FILE:
MSMg01no527_f20.g1 PHD_FILE: MSMg01no527_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:35 2005
(592 letters)
>mm_chr5_92858820_92859811
Length = 992
Score = 1114 bits (576), Expect = 0.0
Identities = 588/592 (99%)
Strand = Plus / Plus
Query: 1 aacaaacgaatgaaaaaatctacatgaacaacactacttcttaatctgtaataaattaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaacgaatgaaaaaatctacatgaacaacactacttcttaatctgtaataaattaac 260
Query: 61 tcatctaagtaatgattaccaatggctgctagcatcattacaaaaccacatatttagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatctaagtaatgattaccaatggctgctagcatcattacaaaaccacatatttagata 320
Query: 121 ttatacattgcatgataaaggatattctatgacacagtcttaaaaataaaatactgaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatacattgcatgataaaggatattctatgacacagtcttaaaaataaaatactgaact 380
Query: 181 atccccaacaattaggagatacagatgacaaagattatgttaactatacaagaatgactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccccaacaattaggagatacagatgacaaagattatgttaactatacaagaatgactt 440
Query: 241 cagtaaagtacaaatagaaaacctgaaagacaaagatctgatttcatctgtgaattaatg 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 cagtaaagtacaaatagaaaacctgaaagacaaagatctgacttcatctgtgaattaatg 500
Query: 301 atataaaaggagcctgcagagatctaagaatggcaaaatgatctgttcagttcacactcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atataaaaggagcctgcagagatctaagaatggcaaaatgatctgttcagttcacactcg 560
Query: 361 tgacgttcacactcatgatgttcacacttgtaaacagcagaactacaaaggaagggaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacgttcacactcatgatgttcacacttgtaaacagcagaactacaaaggaagggaaga 620
Query: 421 ggctgtgaaagccgggacacagctcgtcccatggagcagtgctataagggaagatatgga 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 ggctgtgaaagccgggacacagctcgtcccatggatcagtgctataagggaagatatgga 680
Query: 481 gtgtgctcaggttctgcctcaacatgacaagggtgagcccgtatgtataatctaataaac 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 gtgtgctcaggttctgcctcaacatgacaagggtgagcccgtatgtataatctagtaaac 740
Query: 541 tataccccgacacagaaatcactacagctttcatggactgactgcaaacgta 592
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 tataccccgacacagaaatcactacagctttcatggactgacttcaaacgta 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
