BAC Information

Click to search

BAC

Clone NameMSMg01-527G03
Chromosome5 (Build37)
Map Location 75,552,639 - 75,553,224
singlet/doubletsinglet
Overlap genePdgfra
Upstream geneRasl11b, Scfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, LOC100039125
Downstream geneLOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527G03.T7 (MSMg01no527_g03.b1)MSMg01-527G03.TJ (MSMg01no527_g03.g1)
ACCAG596750AG596751
length762741
length of high quality
(start - end)
402 (79 - 480)588 (84 - 671)
definitionCHROMAT_FILE: MSMg01no527_g03.b1 PHD_FILE: MSMg01no527_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:36 2005CHROMAT_FILE: MSMg01no527_g03.g1 PHD_FILE: MSMg01no527_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAGGTAGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXGCCGCGGAATTCCNTTGTTACTCTCTGTTAAAAAAAAAAAAAAAAA
AAAAAAGGCTGCCACCAAGAAAACAGTTGATGCCAAATGCTGACAAAATA
AGGGGAAAGGAGAGCCTTCATCAGTTGATGCCAAATGCTGACAAAATAAG
AGGAAAGGAGAGCCTTCATACTCTGTCAGTGAACGAGTGCATCCCCTTGG
AAAATGATCTGGTCGGTTCCTTAGAACTGGAGCCAGAGCTATCACGACCT
TGGTATTTCGCTCCTGGGACTATACCTAAGGACTTCACATCCAATTAACA
GAACCTTTGCACATTCCTATCCACTACTGCTCTCATCACCACAGCTAGTT
CATAGAATTAGCCTAGGTGGCCATGGATGGATGAATGGATAATAACAATG
TGGTGCTTGGACACAATGGAATTGTTTTAGTTGTAAAGAAAAATGATGTT
GAGAAATTGGCAGGAACATTGGACAGGACCAGAATATGTACTTATGAAGT
GGTGTAGGCCCATAGAGACTAATATTGCAGGCTATTCTCTCATATGAGGA
TCACATGCTTTAACTTTTTAGATTTTCATGTTTCTACTTTTCAATGCCCT
GTAGAAACCATGTAAGCTTGGCAGGGTGCTTATTTGGGACTTGGCAGCCA
CGGGGGTCTTGTCAATATGCCCTAAAGGAGGAATCTCACATTATCCTGGA
ATAGCAGATGTT
TACNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGATCCAGGGAGATCT
TGGGGGACAGTAGCCGGCGTGTGCGCTCCAGGCCGGCTCAAGCTTCCTTG
GCCTGTTGCTGTCTTAGACCCCGCGTTACCGAGCAATGGGAATAGTCCTT
TCTAACCAACCGGGCTGCAGGGACCCCGCGGGGGGCGGGTTTACGAGCAG
CGAGAACAGAGTGGCAGGGAAAGGCGTCGTGGTCTCTCTTGGCAGGGTCT
AGGTAGCCTTCATGCTTGGAGAGGTGGAAAGTCAAAGGGTGTTGTTTCCC
CTAAACCCAAGTGACCAGTTCTGCAACATCTTTGAGACCTGGTCCACAGC
GCTATCTTCCTGGCTCTCAAGGCACGGCTGTGTCTTGGTCCCTCTTTGGG
CAGTGGTGATGATAATTATGCTGATGGTGACGATGGCGGTATGTTTGTTC
CTCAGTGAAGTCTCTGGAGGTCCCCAAAGAAATTTAGCATTTTAGATAGG
AGTTTTGTCATTTCTTCTTCCACGCCTTAGGAGCTCAACTACAAGTCATC
ACAAGACCTATAAGTAAAGATTAACCTACGATTTTTTTTTAAAGCTGGGA
CATTTTAAAATCAGAACTGGGTTCAATGGCGCCTGTTGCTCAGAGACAAA
TGACACTGGTTCTTGAACCAACACTGCCATCTGCTGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_g03.g1 MSMg01no527_g03.g1 CHROMAT_FILE:
MSMg01no527_g03.g1 PHD_FILE: MSMg01no527_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:36 2005
         (588 letters)



>mm_chr5_75552439_75553425
          Length = 987

 Score = 1096 bits (567), Expect = 0.0
 Identities = 582/587 (99%), Gaps = 1/587 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggatccagggagatcttgggggacagtagccggcgtgtgcgctccaggccggctcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggatccagggagatcttgggggacagtagccggcgtgtgcgctccaggccggctcaagc 260

                                                                       
Query: 61  ttccttggcctgttgctgtcttagaccccgcgttaccgagcaatgggaatagtcctttct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttccttggcctgttgctgtcttagaccccgcgttaccgagcaatggaaatagtcctttct 320

                                                                       
Query: 121 aaccaaccgggctgcagggaccccgcggggggcgggtttacgagcagcgagaacagagtg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaactgggctgcagggaccccgcggggggcgggtttacgagcagcgagaacagagtg 380

                                                                       
Query: 181 gcagggaaaggcgtcgtggtctctcttggcagggtctaggtagccttcatgcttggagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggaaaggcgtcgtggtctctcttggcagggtctaggtagccttcatgcttggagag 440

                                                                       
Query: 241 gtggaaagtcaaagggtgttgtttcccctaaacccaagtgaccagttctgcaacatcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggaaagtcaaagggtgttgtttcccctaaacccaagtgaccagttctgcaacatcttt 500

                                                                       
Query: 301 gagacctggtccacagcgctatcttcctggctctcaaggcacggctgtgtcttggtccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagacctggtccacagcgctatcttcctggctctcaaggcacggctgtgtcttggtccct 560

                                                                       
Query: 361 ctttgggcagtggtgatgataattatgctgatggtgacgatggcggtatgtttgttcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgggcagtggtgatgataattatgctgatggtgacgatggcggtatgtttgttcctc 620

                                                                       
Query: 421 agtgaagtctctggaggtccccaaagaaatttagcattttagataggagttttgtcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgaagtctctggaggtccccaaagaaatttagcattttagataggagttttgtcattt 680

                                                                       
Query: 481 cttcttccacgccttaggagctcaactacaagtcatcacaagacctataagtaaagatta 540
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 cttcttccacgcct-aggagctcaactacaagtcatcacaagacctaaaagtaaagatta 739

                                                          
Query: 541 acctacgatttttttttaaagctgggacattttaaaatcagaactgg 587
           ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 740 acctacgatttttttttaaagttgggacattttaaaatcagaactgg 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space:   564706
Effective search space used:   564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)