BAC Information

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BAC

Clone NameMSMg01-528M01
Chromosome5 (Build37)
Map Location 76,948,114 - 76,948,725
singlet/doubletsinglet
Overlap genenone
Upstream geneKit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545
Downstream geneExoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528M01.T7 (MSMg01no528_m01.b1)MSMg01-528M01.TJ (MSMg01no528_m01.g1)
ACCAG597795AG597796
length752753
length of high quality
(start - end)
623 (69 - 691)626 (80 - 705)
definitionCHROMAT_FILE: MSMg01no528_m01.b1 PHD_FILE: MSMg01no528_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:26 2005CHROMAT_FILE: MSMg01no528_m01.g1 PHD_FILE: MSMg01no528_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAGACTTACTAGAGGAAAAGCTAACAGACTAGAGGAGAAAA
GAATGGAGACATTTATTAATTGCTATACAGCTTCTGTGACAAAAAAGTTT
TAAAAATGGTTGTGTAACACGGCAAATGTGACTAATACTGCCACCTCTCC
TGCCACCTTCTTGTACATTAGAAATGGTTAAACTGGTCAGTATAATGTTA
TATATTGAACATAACTAAAGATAAGTGGTGAACAAACAATATATACTACA
TATGCTAAATGGGTAGGTTATATGGTAAATGAGCTGGAAAATAATAAAGA
TATAAAAGAATATCTTTGAGTCTACTAGAGAGAAAATATGTAAACTCTGC
ACAGATTAAGAGTAAGGGAAACTTTCCTTGCTATTACTCAAAATCCAGAA
ACAGGGTAAAGAATATTAACTATATAAATTATAAAATAATATTGACTATG
TTGTATATATGTCTGTATGCATATGTACACATATATGTATATATACATAC
ACACACACACATATATATATATATATATTGCAAAGCCAAAACAAATTGCA
ACTTGTATAAGCTTGTGTATATGTACTCCTAAAGTTGAAGAGATTTTTAA
AAGACCAGCAACAAATTGGAAAATATATGAGCAGACAGTTCATAGGAAAT
GAATTGCAAATGACACTGGGAAGCTTAAAAAGATGCTCAGCCCTATCCAG
GA
CCCCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGG
GAGGAAGAAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCC
AAAAGCGGCTGGCGAAAGCCAGCGTACTGTTCAACCTCCCGGCAGTCGGT
TTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAA
TGCGCAGAGAGGCAATGCGCAGAGAGATGCGCAGAAAGGCAATGCGCAGA
GAGATGCGCAGAGAGGCAATGCGCAGAGAGATGCGCAGAGAGGCAGTGCG
CAGGGAGATGCGCAGAGAGGCAGTGCGCAGAGAGATGCGCAGAGAGGCAG
TGCGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGACTCATTCATTCC
CAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAG
CCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATACTTACAAATTAAAGAA
ATTGCCGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGGT
GCAGTTAGACAGGCTCGCTGGCATGGCACTAACTCCTGCTGACTGGCAAA
CGGTTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGA
GCGCTTTGGCACGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTGC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_m01.b1 MSMg01no528_m01.b1 CHROMAT_FILE:
MSMg01no528_m01.b1 PHD_FILE: MSMg01no528_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:26 2005
         (623 letters)



>mm_chr5_76947915_76948937
          Length = 1023

 Score = 1067 bits (552), Expect = 0.0
 Identities = 601/624 (96%), Gaps = 13/624 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaggaaaagctaacagactagaggagaaaagaatggagacatttattaattgctatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tagaggaaaagctaacagactagaggagaaaagaatggagacatttattaattgctatac 259

                                                                       
Query: 61  agcttctgtgacaaaaaagttttaaaaatggttgtgtaacacggcaaatgtgactaatac 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcttctgtgacgaaaaagttttaaaaatggttgtgtaacacggcaaatgtgactaatac 319

                                                                       
Query: 121 tgccacct-ctcctgccaccttcttgtacattagaaatggttaaactggtcagtataatg 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgccaccttctcctgccaccttcttgtacattagaaatggttaaactggtcagtataatg 379

                                                                       
Query: 180 ttatatattgaacataactaaagataagtggtgaacaaacaatatatactacatatgcta 239
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ttatatattgaacataactaaagatgagtggtgaacaaacaatatatactacatatgcta 439

                                                                       
Query: 240 aatgggtaggttatatggtaaatgagctggaaaataataaagatataaaagaatatcttt 299
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatgggtaggatatatggtaaatgagctggaaaataataaagatataaaagaatatcttt 499

                                                                       
Query: 300 gagtctactagagagaaaatatgtaaactctgcacagattaagagtaagggaaactttcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagtctactagagagaaaatatgtaaactctgcacagattaagagtaagggaaactttcc 559

                                                                       
Query: 360 ttgctattactcaaaatccagaaacagggtaaagaatattaactatataaattataaaat 419
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 560 ttgctattactcaaaatccagaaacagggtaaataatattaactatataaattaaaaaat 619

                                                                       
Query: 420 aatattgactatgttgtatatatgtctgtatgcatatgtacacatatatgtatatataca 479
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||      
Sbjct: 620 aatattgactatattgtatatatgtctgtatgcatatatacacatatatgtata------ 673

                                                                       
Query: 480 tacacacacacacatatatatatatatatattgcaaagccaaaacaaattgcaacttgta 539
             |||||||||||||||||||||||||    |||||| ||||||||||||||||||||||
Sbjct: 674 --cacacacacacatatatatatatat----tgcaaaaccaaaacaaattgcaacttgta 727

                                                                       
Query: 540 taagcttgtgtatatgtactcctaaagttgaagagatttttaaaagaccagcaacaaatt 599
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 taagcatgtgtatatgtactcctaaagttgaagagatttttaaaagaccagcaacaaatt 787

                                   
Query: 600 ggaaaatatatgagcagacagttc 623
            |||||||||||||||||||||||
Sbjct: 788 agaaaatatatgagcagacagttc 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)